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CHD5
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:43.5 nTPM
FANTOM5:113.6 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:39.8 nTPM

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Hippocampus
nTPM: 21.1
2621 Female, age 67, right hemisphere 32.2
2148 Female, age 91, left hemisphere 26.3
1898 Male, age 80, left hemisphere 21.0
1855 Male, age 76, left hemisphere 19.0
1911 Female, age 85, right hemisphere 14.8
2529 Female, age 94, left hemisphere 13.3
Dentate gyrus
nTPM: 21.0
2531 Female, age 67, both hemispheres 42.7
1927 Female, age 91, both hemispheres 26.4
2528 Male, age 74, both hemispheres 23.2
2246 Female, age 85, both hemispheres 14.0
2530 Female, age 94, left hemisphere 11.6
2010 Male, age 76, both hemispheres 8.3
Entorhinal gyrus
nTPM: 32.6
2613 Female, age 94, left hemisphere 50.4
2686 Male, age 75, right hemisphere 47.7
2764 Male, age 80, right hemisphere 32.4
1938 Female, age 85, left hemisphere 25.1
1787 Male, age 76, left hemisphere 22.9
2117 Female, age 91, right hemisphere 17.2
Hippocampus, CA1
nTPM: 24.4
2527 Male, age 74, both hemispheres 35.9
2749 Male, age 80, left hemisphere 32.1
2082 Female, age 91, right hemisphere 24.1
1873 Female, age 85, both hemispheres 15.9
2045 Male, age 76, both hemispheres 13.9
Hippocampus, CA2
nTPM: 18.5
2437 Female, age 94, left hemisphere 24.9
1892 Male, age 76, both hemispheres 24.0
1963 Male, age 80, left hemisphere 19.9
2113 Female, age 91, right hemisphere 18.8
2249 Male, age 74, both hemispheres 18.3
1940 Female, age 85, left hemisphere 4.7
Hippocampus, CA3
nTPM: 27.2
2861 Female, age 67, both hemispheres 54.9
2620 Female, age 94, left hemisphere 35.9
2137 Male, age 80, left hemisphere 31.1
2436 Male, age 74, both hemispheres 19.3
1867 Male, age 76, both hemispheres 13.2
1891 Female, age 85, both hemispheres 8.7
Parahippocampal cortex
nTPM: 31.0
2622 Female, age 67, right hemisphere 52.1
2693 Female, age 94, both hemispheres 45.2
2245 Female, age 91, both hemispheres 37.9
2250 Female, age 67, right hemisphere 33.1
2692 Male, age 74, both hemispheres 32.5
1933 Female, age 85, both hemispheres 25.6
1850 Male, age 80, both hemispheres 24.0
2532 Female, age 72, left hemisphere 22.8
1990 Female, age 91, right hemisphere 20.6
2018 Male, age 76, both hemispheres 16.3
Perirhinal gyrus
nTPM: 34.3
1847 Female, age 91, left hemisphere 40.3
2521 Female, age 94, right hemisphere 36.5
2848 Male, age 76, right hemisphere 36.0
1794 Male, age 80, right hemisphere 31.0
1841 Female, age 85, right hemisphere 27.8
Subiculum
nTPM: 16.0
2619 Male, age 74, both hemispheres 25.3
2729 Female, age 91, right hemisphere 18.8
2438 Female, age 94, left hemisphere 18.6
1977 Female, age 85, both hemispheres 14.9
1901 Male, age 80, both hemispheres 14.3
2042 Male, age 76, both hemispheres 3.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.5
Samples: 197

Max nTPM: 108.5
Min nTPM: 0.5
Std nTPM: 22.8
Median nTPM: 44.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 108.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 103.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 103.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 100.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 89.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 87.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 84.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 84.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 83.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 82.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 81.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 113.6
FF:10169-103B7 60 years, female 118.2
FF:10153-102I9 76 years, female 109.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.4
Samples: 4

Max nTPM: 36.2
Min nTPM: 21.5
Sample A Female 35.8
Sample B Female 36.2
Sample C Male 27.9
Sample D Male 21.5
Entorhinal cortex
nTPM: 45.9
Samples: 4

Max nTPM: 50.3
Min nTPM: 43.2
Sample A Female 46.6
Sample B Female 43.2
Sample C Male 50.3
Sample D Male 43.5
Subiculum
nTPM: 38.8
Samples: 4

Max nTPM: 53.8
Min nTPM: 29.3
Sample A Female 53.8
Sample B Female 33.6
Sample C Male 38.5
Sample D Male 29.3
Ventral hippocampus
nTPM: 35.7
Samples: 4

Max nTPM: 47.4
Min nTPM: 27.5
Sample A Female 30.9
Sample B Female 27.5
Sample C Male 47.4
Sample D Male 37.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 39.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.8
Samples: 4

Max nTPM: 51.5
Min nTPM: 35.2
Sample A Male 36.0
Sample B Male 36.5
Sample C Female 35.2
Sample D Female 51.5
Hippocampal formation
nTPM: 23.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 20.7
Sample A Male 21.6
Sample B Male 26.6
Sample C Female 20.7
Sample D Female 23.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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