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RAP1A
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.6 nTPM
HPA:55.6 nTPM
GTEx:50.6 nTPM
FANTOM5:76.3 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:56.6 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.3
2288 Male, age 75, left hemisphere 47.9
2481 Female, age 94, left hemisphere 47.6
2846 Female, age 79, unknown 46.9
1854 Male, age 80, left hemisphere 44.3
2290 Female, age 72, unknown 43.6
1857 Female, age 85, left hemisphere 42.4
1781 Male, age 74, unknown 41.8
2289 Male, age 61, right hemisphere 40.0
Claustrum
nTPM: 43.9
2292 Female, age 85, both hemispheres 50.0
1956 Male, age 74, unknown 48.8
2392 Female, age 94, both hemispheres 47.5
2196 Female, age 79, unknown 45.3
2491 Male, age 75, both hemispheres 44.0
2198 Male, age 80, both hemispheres 43.0
2284 Female, age 91, both hemispheres 39.3
2568 Male, age 61, both hemispheres 39.1
2645 Female, age 72, unknown 38.0
Globus pallidus, externus
nTPM: 51.9
2772 Female, age 79, unknown 56.8
2395 Male, age 75, both hemispheres 55.8
1996 Male, age 80, right hemisphere 55.6
2567 Female, age 72, unknown 46.0
2646 Male, age 61, right hemisphere 45.2
Globus pallidus, internus
nTPM: 55.6
2287 Male, age 75, right hemisphere 60.5
2111 Female, age 85, right hemisphere 59.8
2778 Female, age 91, both hemispheres 59.3
1818 Male, age 74, unknown 55.6
2037 Male, age 80, right hemisphere 54.4
2483 Female, age 94, right hemisphere 52.3
2566 Female, age 72, unknown 47.5
Nucleus accumbens
nTPM: 44.8
2391 Female, age 94, left hemisphere 54.6
2698 Female, age 72, unknown 47.0
2286 Male, age 75, left hemisphere 46.8
1806 Female, age 85, left hemisphere 44.3
2732 Male, age 80, right hemisphere 42.4
1783 Male, age 74, unknown 42.2
1856 Female, age 91, right hemisphere 42.1
2824 Male, age 61, right hemisphere 39.1
Nucleus basalis of Meynert
nTPM: 46.0
2821 Male, age 75, both hemispheres 47.5
2393 Male, age 80, right hemisphere 46.1
2484 Female, age 94, left hemisphere 45.9
2569 Male, age 61, both hemispheres 44.5
Nucleus of the diagonal band
nTPM: 39.1
1812 Female, age 91, both hemispheres 44.0
2775 Male, age 80, right hemisphere 38.5
2029 Male, age 61, right hemisphere 38.0
2195 Female, age 85, both hemispheres 37.9
1979 Male, age 74, unknown 36.9
Olfactory tubercle
nTPM: 39.0
1846 Male, age 80, right hemisphere 41.8
2856 Male, age 75, right hemisphere 39.5
2487 Female, age 94, left hemisphere 37.8
1998 Female, age 91, both hemispheres 37.1
Putamen
nTPM: 43.2
2482 Female, age 94, left hemisphere 47.2
1829 Male, age 74, unknown 45.9
1937 Female, age 91, right hemisphere 43.4
2647 Male, age 75, left hemisphere 43.1
2466 Female, age 79, unknown 42.6
2489 Female, age 72, unknown 40.3
1838 Male, age 80, right hemisphere 39.6
Septal nuclei
nTPM: 40.6
2394 Male, age 61, left hemisphere 47.2
2199 Male, age 80, right hemisphere 44.0
2031 Female, age 72, unknown 40.6
2629 Female, age 94, right hemisphere 40.2
2009 Female, age 91, both hemispheres 39.7
1960 Male, age 74, unknown 36.7
2059 Female, age 85, both hemispheres 35.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.0
Samples: 246

Max nTPM: 133.0
Min nTPM: 21.1
Std nTPM: 13.1
Median nTPM: 40.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 133.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 89.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 82.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 82.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 81.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 80.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 80.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 71.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 67.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 66.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.1
Samples: 246

Max nTPM: 119.3
Min nTPM: 16.5
Std nTPM: 14.1
Median nTPM: 33.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 119.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 95.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 87.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 84.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 82.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 74.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 73.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 72.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 70.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 67.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 66.5
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Brain - Putamen (basal ganglia)
Average nTPM: 50.6
Samples: 205

Max nTPM: 131.8
Min nTPM: 24.9
Std nTPM: 15.1
Median nTPM: 47.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 131.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 99.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 92.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 90.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 89.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 89.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 87.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 84.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 84.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 84.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 81.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.6
FF:10164-103B2 76 years, female 51.6
Globus pallidus
Scaled Tags Per Million: 76.3
FF:10161-103A8 76 years, female 102.0
FF:10175-103C4 60 years, female 50.5
Nucleus accumbens
Scaled Tags Per Million: 51.0
FF:10037-101F1 23-56 years, mixed 51.0
Putamen
Scaled Tags Per Million: 45.3
FF:10176-103C5 60 years, female 45.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Caudate
nTPM: 8.8
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.3
Sample A Female 9.4
Sample B Female 7.3
Sample C Male 8.5
Sample D Male 9.9
Putamen
nTPM: 12.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.7
Sample A Female 14.1
Sample B Female 10.7
Sample C Male 12.7
Sample D Male 11.9
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.8
Sample A Female 11.2
Sample B Female 9.8
Sample C Male 11.3
Sample D Male 11.4
Ventral pallidum
nTPM: 11.3
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.3
Sample A Female 11.2
Sample B Female 10.3
Sample C Male 10.9
Sample D Male 12.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 56.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.3
Samples: 4

Max nTPM: 58.9
Min nTPM: 49.3
Sample A Male 57.4
Sample B Male 49.3
Sample C Female 58.9
Sample D Female 55.5
Septum
nTPM: 56.6
Samples: 4

Max nTPM: 65.2
Min nTPM: 42.2
Sample A Male 42.2
Sample B Male 63.4
Sample C Female 55.6
Sample D Female 65.2
Ventral forebrain
nTPM: 46.1
Samples: 4

Max nTPM: 52.4
Min nTPM: 41.7
Sample A Male 52.4
Sample B Male 41.7
Sample C Female 45.6
Sample D Female 44.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
75831752 Antisense, RP_060601_02_D01, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.8
75831752 Antisense, RP_060601_02_D01, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.