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HPCAL4
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.2 nTPM
HPA:91.2 nTPM
GTEx:81.6 nTPM
FANTOM5:272.1 Scaled Tags Per Million
Pig:450.0 nTPM
Mouse:574.8 nTPM
Allen mouse:15.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 91.2
Sample id Sample description nTPM
Hippocampus
nTPM: 56.4
1898 Male, age 80, left hemisphere 69.0
2148 Female, age 91, left hemisphere 67.5
2621 Female, age 67, right hemisphere 60.5
1855 Male, age 76, left hemisphere 52.4
1911 Female, age 85, right hemisphere 48.9
2529 Female, age 94, left hemisphere 40.1
Dentate gyrus
nTPM: 62.2
2531 Female, age 67, both hemispheres 85.3
1927 Female, age 91, both hemispheres 77.2
2246 Female, age 85, both hemispheres 60.6
2528 Male, age 74, both hemispheres 55.5
2010 Male, age 76, both hemispheres 49.4
2530 Female, age 94, left hemisphere 45.0
Entorhinal gyrus
nTPM: 65.3
2613 Female, age 94, left hemisphere 83.5
1938 Female, age 85, left hemisphere 78.2
2764 Male, age 80, right hemisphere 71.7
1787 Male, age 76, left hemisphere 66.1
2686 Male, age 75, right hemisphere 53.3
2117 Female, age 91, right hemisphere 38.9
Hippocampus, CA1
nTPM: 64.2
2749 Male, age 80, left hemisphere 78.6
2045 Male, age 76, both hemispheres 65.7
1873 Female, age 85, both hemispheres 64.0
2082 Female, age 91, right hemisphere 57.0
2527 Male, age 74, both hemispheres 55.6
Hippocampus, CA2
nTPM: 48.9
1963 Male, age 80, left hemisphere 63.9
2113 Female, age 91, right hemisphere 57.2
1892 Male, age 76, both hemispheres 54.1
2437 Female, age 94, left hemisphere 43.3
1940 Female, age 85, left hemisphere 40.2
2249 Male, age 74, both hemispheres 34.7
Hippocampus, CA3
nTPM: 68.1
2620 Female, age 94, left hemisphere 108.7
2861 Female, age 67, both hemispheres 84.4
2137 Male, age 80, left hemisphere 79.9
1867 Male, age 76, both hemispheres 48.6
1891 Female, age 85, both hemispheres 44.5
2436 Male, age 74, both hemispheres 42.2
Parahippocampal cortex
nTPM: 62.9
2245 Female, age 91, both hemispheres 80.8
1850 Male, age 80, both hemispheres 77.5
1933 Female, age 85, both hemispheres 76.0
2693 Female, age 94, both hemispheres 69.3
2250 Female, age 67, right hemisphere 65.9
1990 Female, age 91, right hemisphere 64.1
2622 Female, age 67, right hemisphere 58.2
2532 Female, age 72, left hemisphere 49.7
2018 Male, age 76, both hemispheres 47.2
2692 Male, age 74, both hemispheres 40.2
Perirhinal gyrus
nTPM: 91.2
1847 Female, age 91, left hemisphere 120.7
2521 Female, age 94, right hemisphere 92.6
1794 Male, age 80, right hemisphere 89.3
2848 Male, age 76, right hemisphere 76.8
1841 Female, age 85, right hemisphere 76.7
Subiculum
nTPM: 41.6
1977 Female, age 85, both hemispheres 57.4
2729 Female, age 91, right hemisphere 52.6
1901 Male, age 80, both hemispheres 41.1
2619 Male, age 74, both hemispheres 38.3
2438 Female, age 94, left hemisphere 30.0
2042 Male, age 76, both hemispheres 29.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 81.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 81.6
Samples: 197

Max nTPM: 302.5
Min nTPM: 5.5
Std nTPM: 53.7
Median nTPM: 77.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 302.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 296.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 220.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 220.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 218.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 199.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 199.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 191.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 185.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 178.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 178.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 272.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 272.1
FF:10169-103B7 60 years, female 341.1
FF:10153-102I9 76 years, female 203.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 450.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 279.0
Samples: 4

Max nTPM: 365.5
Min nTPM: 206.2
Sample A Female 336.5
Sample B Female 365.5
Sample C Male 207.6
Sample D Male 206.2
Entorhinal cortex
nTPM: 450.0
Samples: 4

Max nTPM: 574.6
Min nTPM: 366.9
Sample A Female 488.2
Sample B Female 370.4
Sample C Male 574.6
Sample D Male 366.9
Subiculum
nTPM: 395.6
Samples: 4

Max nTPM: 513.0
Min nTPM: 306.8
Sample A Female 513.0
Sample B Female 368.5
Sample C Male 393.9
Sample D Male 306.8
Ventral hippocampus
nTPM: 338.4
Samples: 4

Max nTPM: 383.2
Min nTPM: 290.1
Sample A Female 290.1
Sample B Female 320.7
Sample C Male 383.2
Sample D Male 359.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 574.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 574.8
Samples: 4

Max nTPM: 694.7
Min nTPM: 513.0
Sample A Male 513.0
Sample B Male 516.9
Sample C Female 574.7
Sample D Female 694.7
Hippocampal formation
nTPM: 439.5
Samples: 4

Max nTPM: 536.0
Min nTPM: 383.8
Sample A Male 536.0
Sample B Male 422.4
Sample C Female 383.8
Sample D Female 415.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.8
73520985 Antisense, RP_051101_02_G04, Mouse strain C57BL/6J (56 days, male) 16.1
69735078 Antisense, RP_050503_02_A07, Mouse strain C57BL/6J (56 days, male) 15.6

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