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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:13.1 nTPM
HPA:13.1 nTPM
GTEx:15.0 nTPM
FANTOM5:78.2 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:39.3 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA075946
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.6
2846 Female, age 79, unknown 15.3
1857 Female, age 85, left hemisphere 14.0
1854 Male, age 80, left hemisphere 13.4
2290 Female, age 72, unknown 13.2
1781 Male, age 74, unknown 11.8
2288 Male, age 75, left hemisphere 6.7
2289 Male, age 61, right hemisphere 5.9
2481 Female, age 94, left hemisphere 4.1
Claustrum
nTPM: 8.9
2198 Male, age 80, both hemispheres 11.1
1956 Male, age 74, unknown 10.8
2491 Male, age 75, both hemispheres 10.6
2392 Female, age 94, both hemispheres 10.3
2284 Female, age 91, both hemispheres 8.9
2196 Female, age 79, unknown 8.5
2568 Male, age 61, both hemispheres 8.0
2645 Female, age 72, unknown 7.0
2292 Female, age 85, both hemispheres 5.0
Globus pallidus, externus
nTPM: 0.5
2395 Male, age 75, both hemispheres 2.0
2772 Female, age 79, unknown 0.4
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 0.6
2287 Male, age 75, right hemisphere 2.4
2483 Female, age 94, right hemisphere 2.3
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 11.5
1856 Female, age 91, right hemisphere 22.0
2824 Male, age 61, right hemisphere 15.1
1783 Male, age 74, unknown 14.6
1806 Female, age 85, left hemisphere 14.2
2698 Female, age 72, unknown 10.5
2286 Male, age 75, left hemisphere 9.5
2391 Female, age 94, left hemisphere 3.2
2732 Male, age 80, right hemisphere 3.2
Nucleus basalis of Meynert
nTPM: 4.8
2393 Male, age 80, right hemisphere 10.8
2484 Female, age 94, left hemisphere 5.2
2821 Male, age 75, both hemispheres 3.3
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 12.7
2775 Male, age 80, right hemisphere 15.3
1812 Female, age 91, both hemispheres 14.4
2029 Male, age 61, right hemisphere 14.2
2195 Female, age 85, both hemispheres 13.9
1979 Male, age 74, unknown 5.8
Olfactory tubercle
nTPM: 13.1
1846 Male, age 80, right hemisphere 13.9
1998 Female, age 91, both hemispheres 13.3
2856 Male, age 75, right hemisphere 12.7
2487 Female, age 94, left hemisphere 12.5
Putamen
nTPM: 10.4
1838 Male, age 80, right hemisphere 18.1
1937 Female, age 91, right hemisphere 15.8
2466 Female, age 79, unknown 14.3
1829 Male, age 74, unknown 13.4
2489 Female, age 72, unknown 4.5
2647 Male, age 75, left hemisphere 3.7
2482 Female, age 94, left hemisphere 3.2
Septal nuclei
nTPM: 8.9
2031 Female, age 72, unknown 16.6
1960 Male, age 74, unknown 13.7
2629 Female, age 94, right hemisphere 11.7
2009 Female, age 91, both hemispheres 10.5
2059 Female, age 85, both hemispheres 7.7
2199 Male, age 80, right hemisphere 1.4
2394 Male, age 61, left hemisphere 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.3
Samples: 246

Max nTPM: 53.8
Min nTPM: 3.4
Std nTPM: 6.3
Median nTPM: 11.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 53.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 29.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 28.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 27.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 27.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 26.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 26.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 24.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 24.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 23.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 23.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.0
Samples: 246

Max nTPM: 38.8
Min nTPM: 3.2
Std nTPM: 6.5
Median nTPM: 15.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 38.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 30.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 29.5
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 29.3
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 28.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 28.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 28.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 27.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 27.8
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 27.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 27.0
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Brain - Putamen (basal ganglia)
Average nTPM: 11.0
Samples: 205

Max nTPM: 31.8
Min nTPM: 3.3
Std nTPM: 5.3
Median nTPM: 10.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 31.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 29.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 27.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 23.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 23.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 22.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 21.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 21.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 20.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 20.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 19.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.6
FF:10164-103B2 76 years, female 59.6
Globus pallidus
Scaled Tags Per Million: 16.5
FF:10175-103C4 60 years, female 21.3
FF:10161-103A8 76 years, female 11.7
Nucleus accumbens
Scaled Tags Per Million: 53.6
FF:10037-101F1 23-56 years, mixed 53.6
Putamen
Scaled Tags Per Million: 78.2
FF:10176-103C5 60 years, female 78.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.5
Pig sample Sample description nTPM
Caudate
nTPM: 27.6
Samples: 4

Max nTPM: 30.9
Min nTPM: 24.8
Sample A Female 26.0
Sample B Female 24.8
Sample C Male 30.9
Sample D Male 28.5
Putamen
nTPM: 29.5
Samples: 4

Max nTPM: 45.2
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 31.8
Sample C Male 45.2
Sample D Male 27.4
Septum
nTPM: 18.3
Samples: 4

Max nTPM: 22.4
Min nTPM: 12.9
Sample A Female 22.4
Sample B Female 21.9
Sample C Male 15.9
Sample D Male 12.9
Ventral pallidum
nTPM: 23.7
Samples: 4

Max nTPM: 35.2
Min nTPM: 16.2
Sample A Female 35.2
Sample B Female 21.7
Sample C Male 16.2
Sample D Male 21.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.2
Samples: 4

Max nTPM: 36.2
Min nTPM: 30.9
Sample A Male 36.2
Sample B Male 30.9
Sample C Female 34.7
Sample D Female 35.0
Septum
nTPM: 38.9
Samples: 4

Max nTPM: 43.0
Min nTPM: 35.7
Sample A Male 43.0
Sample B Male 35.7
Sample C Female 37.4
Sample D Female 39.3
Ventral forebrain
nTPM: 39.3
Samples: 4

Max nTPM: 42.9
Min nTPM: 37.4
Sample A Male 38.5
Sample B Male 42.9
Sample C Female 37.4
Sample D Female 38.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
73817985 Antisense, RP_051214_01_A10, Mouse strain C57BL/6J (56 days, male) 4.3
68196952 Antisense, RP_040916_02_G07, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 2.9
73817985 Antisense, RP_051214_01_A10, Mouse strain C57BL/6J (56 days, male) 5.0
68196952 Antisense, RP_040916_02_G07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.