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ID3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:39.2 nTPM
HPA:39.2 nTPM
GTEx:46.8 nTPM
FANTOM5:213.1 Scaled Tags Per Million
Pig:53.4 nTPM
Mouse:46.8 nTPM
Allen mouse:4.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024677Antibody CAB021353
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.2
Sample id Sample description nTPM
Hippocampus
nTPM: 39.2
2529 Female, age 94, left hemisphere 46.5
1911 Female, age 85, right hemisphere 40.5
1855 Male, age 76, left hemisphere 39.6
1898 Male, age 80, left hemisphere 38.2
2148 Female, age 91, left hemisphere 35.2
2621 Female, age 67, right hemisphere 35.1
Dentate gyrus
nTPM: 36.4
2528 Male, age 74, both hemispheres 43.1
2530 Female, age 94, left hemisphere 40.6
2531 Female, age 67, both hemispheres 36.6
2246 Female, age 85, both hemispheres 34.3
2010 Male, age 76, both hemispheres 32.0
1927 Female, age 91, both hemispheres 31.9
Entorhinal gyrus
nTPM: 33.6
2117 Female, age 91, right hemisphere 41.8
1787 Male, age 76, left hemisphere 36.3
2686 Male, age 75, right hemisphere 33.2
2764 Male, age 80, right hemisphere 32.2
1938 Female, age 85, left hemisphere 29.7
2613 Female, age 94, left hemisphere 28.4
Hippocampus, CA1
nTPM: 34.0
2527 Male, age 74, both hemispheres 39.2
1873 Female, age 85, both hemispheres 37.5
2082 Female, age 91, right hemisphere 36.8
2045 Male, age 76, both hemispheres 29.6
2749 Male, age 80, left hemisphere 27.1
Hippocampus, CA2
nTPM: 37.6
2249 Male, age 74, both hemispheres 42.2
2113 Female, age 91, right hemisphere 39.6
1963 Male, age 80, left hemisphere 39.4
2437 Female, age 94, left hemisphere 38.5
1940 Female, age 85, left hemisphere 37.6
1892 Male, age 76, both hemispheres 28.0
Hippocampus, CA3
nTPM: 35.3
2861 Female, age 67, both hemispheres 40.0
1891 Female, age 85, both hemispheres 39.5
2620 Female, age 94, left hemisphere 36.9
2436 Male, age 74, both hemispheres 35.8
1867 Male, age 76, both hemispheres 29.8
2137 Male, age 80, left hemisphere 29.5
Parahippocampal cortex
nTPM: 30.8
1990 Female, age 91, right hemisphere 33.6
2245 Female, age 91, both hemispheres 33.3
2692 Male, age 74, both hemispheres 32.9
2250 Female, age 67, right hemisphere 31.1
2622 Female, age 67, right hemisphere 30.9
2532 Female, age 72, left hemisphere 30.2
2018 Male, age 76, both hemispheres 29.8
1933 Female, age 85, both hemispheres 29.4
1850 Male, age 80, both hemispheres 28.9
2693 Female, age 94, both hemispheres 27.8
Perirhinal gyrus
nTPM: 30.0
2521 Female, age 94, right hemisphere 32.0
2848 Male, age 76, right hemisphere 31.0
1841 Female, age 85, right hemisphere 30.1
1794 Male, age 80, right hemisphere 28.8
1847 Female, age 91, left hemisphere 28.0
Subiculum
nTPM: 36.2
2729 Female, age 91, right hemisphere 40.2
2042 Male, age 76, both hemispheres 38.0
2619 Male, age 74, both hemispheres 38.0
1901 Male, age 80, both hemispheres 34.1
2438 Female, age 94, left hemisphere 33.7
1977 Female, age 85, both hemispheres 33.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 46.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.8
Samples: 197

Max nTPM: 163.2
Min nTPM: 10.3
Std nTPM: 25.9
Median nTPM: 41.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 163.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 135.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 135.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 117.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 116.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 115.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 114.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 107.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 105.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 101.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 91.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 213.1
FF:10153-102I9 76 years, female 297.5
FF:10169-103B7 60 years, female 128.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.7
Samples: 4

Max nTPM: 55.5
Min nTPM: 29.9
Sample A Female 38.5
Sample B Female 30.7
Sample C Male 55.5
Sample D Male 29.9
Entorhinal cortex
nTPM: 49.8
Samples: 4

Max nTPM: 65.0
Min nTPM: 26.5
Sample A Female 65.0
Sample B Female 49.3
Sample C Male 58.2
Sample D Male 26.5
Subiculum
nTPM: 48.4
Samples: 4

Max nTPM: 64.9
Min nTPM: 29.0
Sample A Female 56.4
Sample B Female 29.0
Sample C Male 43.4
Sample D Male 64.9
Ventral hippocampus
nTPM: 53.4
Samples: 4

Max nTPM: 82.3
Min nTPM: 33.9
Sample A Female 59.9
Sample B Female 33.9
Sample C Male 82.3
Sample D Male 37.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 46.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 43.3
Samples: 4

Max nTPM: 47.6
Min nTPM: 37.9
Sample A Male 47.6
Sample B Male 42.7
Sample C Female 44.9
Sample D Female 37.9
Hippocampal formation
nTPM: 46.9
Samples: 4

Max nTPM: 49.6
Min nTPM: 44.4
Sample A Male 45.7
Sample B Male 44.4
Sample C Female 47.7
Sample D Female 49.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
81654091 Antisense, RP_080228_04_B09, Mouse strain C57BL/6J (56 days, male) 4.4
74724763 Antisense, RP_060220_04_B06, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.