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IPO13
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:66.5 nTPM
HPA:66.5 nTPM
GTEx:68.0 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:60.5 nTPM
Mouse:53.8 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB070425
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 66.5
Sample id Sample description nTPM
Hippocampus
nTPM: 63.1
1911 Female, age 85, right hemisphere 64.7
1855 Male, age 76, left hemisphere 63.5
2621 Female, age 67, right hemisphere 63.5
2529 Female, age 94, left hemisphere 63.0
1898 Male, age 80, left hemisphere 62.3
2148 Female, age 91, left hemisphere 61.8
Dentate gyrus
nTPM: 63.5
2530 Female, age 94, left hemisphere 73.4
2010 Male, age 76, both hemispheres 66.3
2528 Male, age 74, both hemispheres 63.8
2246 Female, age 85, both hemispheres 61.4
2531 Female, age 67, both hemispheres 58.3
1927 Female, age 91, both hemispheres 57.9
Entorhinal gyrus
nTPM: 63.9
2117 Female, age 91, right hemisphere 76.4
2764 Male, age 80, right hemisphere 68.7
2613 Female, age 94, left hemisphere 64.8
2686 Male, age 75, right hemisphere 58.5
1938 Female, age 85, left hemisphere 58.1
1787 Male, age 76, left hemisphere 56.8
Hippocampus, CA1
nTPM: 61.5
2749 Male, age 80, left hemisphere 64.2
1873 Female, age 85, both hemispheres 63.8
2527 Male, age 74, both hemispheres 62.6
2082 Female, age 91, right hemisphere 61.2
2045 Male, age 76, both hemispheres 55.4
Hippocampus, CA2
nTPM: 62.6
1963 Male, age 80, left hemisphere 74.4
2249 Male, age 74, both hemispheres 63.6
2437 Female, age 94, left hemisphere 62.1
2113 Female, age 91, right hemisphere 60.7
1940 Female, age 85, left hemisphere 59.9
1892 Male, age 76, both hemispheres 54.8
Hippocampus, CA3
nTPM: 59.5
1891 Female, age 85, both hemispheres 68.3
2620 Female, age 94, left hemisphere 62.4
2137 Male, age 80, left hemisphere 58.8
1867 Male, age 76, both hemispheres 57.0
2436 Male, age 74, both hemispheres 56.7
2861 Female, age 67, both hemispheres 53.8
Parahippocampal cortex
nTPM: 57.4
2692 Male, age 74, both hemispheres 65.5
2532 Female, age 72, left hemisphere 63.7
1990 Female, age 91, right hemisphere 59.6
1850 Male, age 80, both hemispheres 57.8
2245 Female, age 91, both hemispheres 57.3
1933 Female, age 85, both hemispheres 56.8
2018 Male, age 76, both hemispheres 56.7
2693 Female, age 94, both hemispheres 56.1
2250 Female, age 67, right hemisphere 50.4
2622 Female, age 67, right hemisphere 50.2
Perirhinal gyrus
nTPM: 55.0
2521 Female, age 94, right hemisphere 60.9
1794 Male, age 80, right hemisphere 55.4
1847 Female, age 91, left hemisphere 54.5
1841 Female, age 85, right hemisphere 52.2
2848 Male, age 76, right hemisphere 52.0
Subiculum
nTPM: 66.5
2042 Male, age 76, both hemispheres 74.3
1901 Male, age 80, both hemispheres 71.7
1977 Female, age 85, both hemispheres 64.6
2729 Female, age 91, right hemisphere 63.5
2438 Female, age 94, left hemisphere 62.5
2619 Male, age 74, both hemispheres 62.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.0
Samples: 197

Max nTPM: 202.4
Min nTPM: 16.7
Std nTPM: 23.4
Median nTPM: 66.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 202.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 159.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 136.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 126.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 121.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 120.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 115.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 114.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 111.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 111.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 110.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.2
FF:10153-102I9 76 years, female 82.2
FF:10169-103B7 60 years, female 72.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 60.5
Samples: 4

Max nTPM: 79.9
Min nTPM: 39.8
Sample A Female 79.9
Sample B Female 58.8
Sample C Male 63.6
Sample D Male 39.8
Entorhinal cortex
nTPM: 36.5
Samples: 4

Max nTPM: 38.5
Min nTPM: 35.2
Sample A Female 35.2
Sample B Female 38.5
Sample C Male 35.8
Sample D Male 36.5
Subiculum
nTPM: 38.5
Samples: 4

Max nTPM: 44.1
Min nTPM: 34.8
Sample A Female 44.1
Sample B Female 35.6
Sample C Male 34.8
Sample D Male 39.3
Ventral hippocampus
nTPM: 53.0
Samples: 4

Max nTPM: 67.7
Min nTPM: 35.3
Sample A Female 54.1
Sample B Female 35.3
Sample C Male 54.8
Sample D Male 67.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.0
Samples: 4

Max nTPM: 46.4
Min nTPM: 42.8
Sample A Male 46.0
Sample B Male 42.8
Sample C Female 44.8
Sample D Female 46.4
Hippocampal formation
nTPM: 53.9
Samples: 4

Max nTPM: 62.2
Min nTPM: 46.5
Sample A Male 46.5
Sample B Male 53.6
Sample C Female 62.2
Sample D Female 53.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
68632178 Antisense, RP_050125_01_G12, Mouse strain C57BL/6J (56 days, male) 6.1

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