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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.1 nTPM
HPA:108.1 nTPM
GTEx:71.1 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:89.7 nTPM
Mouse:96.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.5
2586 Male, age 75, left hemisphere 113.4
1827 Male, age 72, unknown 107.9
2828 Female, age 72, unknown 104.6
2666 Male, age 74, left hemisphere 101.3
2219 Male, age 76, both hemispheres 100.9
2411 Female, age 72, unknown 98.0
1833 Male, age 53, unknown 95.9
1870 Female, age 42, unknown 95.8
2019 Male, age 18, unknown 93.9
1830 Male, age 51, unknown 93.3
Dorsal raphe nucleus
nTPM: 98.5
2298 Female, age 72, unknown 100.5
2750 Male, age 76, both hemispheres 99.1
2047 Male, age 72, unknown 98.4
1828 Male, age 53, unknown 98.3
2016 Female, age 72, unknown 96.0
Inferior colliculus
nTPM: 95.1
1890 Male, age 53, unknown 95.8
2849 Male, age 72, unknown 95.3
2097 Female, age 72, unknown 94.9
1848 Female, age 42, unknown 94.3
Median raphe nucleus
nTPM: 100.3
2220 Male, age 76, midline 100.3
Pedunculopontine tegmental nucleus
nTPM: 94.9
2334 Male, age 80, both hemispheres 101.8
1921 Female, age 85, both hemispheres 95.5
2338 Male, age 61, both hemispheres 87.3
Periaquaductal grey, anterior
nTPM: 108.1
1947 Male, age 18, unknown 111.1
1795 Male, age 51, unknown 108.9
2502 Female, age 75, unknown 104.4
Periaquaductal grey, dorsal
nTPM: 97.3
1840 Male, age 53, unknown 100.6
2464 Female, age 72, unknown 98.5
2850 Male, age 76, both hemispheres 96.3
1831 Male, age 72, unknown 94.0
Periaquaductal grey, lateral
nTPM: 96.8
2053 Male, age 18, unknown 100.6
2272 Male, age 74, both hemispheres 95.1
2140 Male, age 76, both hemispheres 94.6
Pretectal area
nTPM: 103.2
1816 Male, age 51, unknown 111.5
1944 Female, age 72, unknown 106.4
2667 Female, age 75, unknown 106.4
2007 Male, age 72, unknown 105.5
1817 Female, age 42, unknown 104.9
1815 Male, age 53, unknown 104.7
2407 Male, age 75, both hemispheres 101.4
2224 Female, age 72, unknown 101.1
2825 Male, age 18, unknown 101.1
2273 Male, age 74, both hemispheres 98.4
2316 Male, age 76, right hemisphere 94.1
Red nucleus
nTPM: 96.1
2725 Female, age 75, unknown 101.3
2584 Male, age 75, left hemisphere 100.0
2588 Male, age 74, left hemisphere 99.6
2503 Female, age 72, unknown 98.2
2227 Male, age 72, unknown 95.6
1865 Male, age 51, unknown 95.1
1904 Male, age 53, unknown 95.0
1821 Female, age 72, unknown 94.8
2785 Male, age 18, unknown 94.1
2769 Male, age 72, unknown 93.7
2823 Male, age 76, right hemisphere 93.2
1954 Female, age 42, unknown 92.4
Substantia nigra
nTPM: 102.9
1916 Female, age 42, unknown 108.5
1851 Male, age 51, unknown 108.3
2241 Male, age 72, unknown 105.3
2409 Female, age 72, unknown 104.2
2583 Male, age 75, right hemisphere 102.7
2699 Male, age 18, unknown 102.0
2665 Male, age 74, both hemispheres 101.0
1889 Female, age 72, unknown 100.6
1941 Male, age 53, unknown 100.4
2590 Female, age 75, unknown 95.6
Superior colliculus
nTPM: 101.5
2664 Male, age 75, both hemispheres 111.7
1796 Male, age 53, unknown 107.2
2261 Male, age 18, unknown 106.4
2668 Female, age 75, unknown 103.2
2087 Female, age 72, unknown 101.4
1913 Female, age 42, unknown 98.2
1839 Male, age 51, unknown 97.3
1895 Male, age 76, right hemisphere 96.8
2587 Male, age 74, left hemisphere 96.6
1995 Male, age 72, unknown 96.0
Ventral tegmental area
nTPM: 100.8
1915 Female, age 42, unknown 104.7
2218 Male, age 76, both hemispheres 102.4
2410 Female, age 72, unknown 102.2
1942 Male, age 51, unknown 100.0
2223 Female, age 72, unknown 98.0
2021 Male, age 53, unknown 97.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.1
Samples: 139

Max nTPM: 117.9
Min nTPM: 33.1
Std nTPM: 16.1
Median nTPM: 69.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 117.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 114.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 111.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 102.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 100.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 97.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 96.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 96.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 93.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.7
Pig sample Sample description nTPM
Midbrain
nTPM: 89.8
Samples: 4

Max nTPM: 120.1
Min nTPM: 77.4
Sample A Female 81.1
Sample B Female 80.4
Sample C Male 120.1
Sample D Male 77.4
Periaqueductal gray
nTPM: 71.8
Samples: 3

Max nTPM: 81.7
Min nTPM: 64.0
Sample B Female 69.8
Sample C Male 81.7
Sample D Male 64.0
Substantia nigra
nTPM: 79.5
Samples: 4

Max nTPM: 102.5
Min nTPM: 57.8
Sample A Female 102.5
Sample B Female 70.1
Sample C Male 87.4
Sample D Male 57.8
Superior colliculi
nTPM: 84.5
Samples: 4

Max nTPM: 102.4
Min nTPM: 49.9
Sample A Female 102.4
Sample B Female 49.9
Sample C Male 98.6
Sample D Male 87.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.7
Samples: 4

Max nTPM: 97.8
Min nTPM: 94.4
Sample A Male 97.3
Sample B Male 97.8
Sample C Female 94.4
Sample D Female 97.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.