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TXNDC12
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA:40.7 nTPM
GTEx:20.4 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:39.9 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.7
2481 Female, age 94, left hemisphere 44.7
1857 Female, age 85, left hemisphere 41.4
2288 Male, age 75, left hemisphere 41.0
2846 Female, age 79, unknown 40.9
1781 Male, age 74, unknown 39.7
2290 Female, age 72, unknown 39.6
1854 Male, age 80, left hemisphere 39.5
2289 Male, age 61, right hemisphere 38.6
Claustrum
nTPM: 38.3
2196 Female, age 79, unknown 39.3
1956 Male, age 74, unknown 39.2
2198 Male, age 80, both hemispheres 38.9
2292 Female, age 85, both hemispheres 38.7
2392 Female, age 94, both hemispheres 38.7
2491 Male, age 75, both hemispheres 38.2
2284 Female, age 91, both hemispheres 37.8
2568 Male, age 61, both hemispheres 37.3
2645 Female, age 72, unknown 36.8
Globus pallidus, externus
nTPM: 39.5
1996 Male, age 80, right hemisphere 42.3
2395 Male, age 75, both hemispheres 41.9
2772 Female, age 79, unknown 41.5
2646 Male, age 61, right hemisphere 36.1
2567 Female, age 72, unknown 35.8
Globus pallidus, internus
nTPM: 40.0
2778 Female, age 91, both hemispheres 42.4
2483 Female, age 94, right hemisphere 41.0
2287 Male, age 75, right hemisphere 40.9
1818 Male, age 74, unknown 40.3
2037 Male, age 80, right hemisphere 40.2
2111 Female, age 85, right hemisphere 38.7
2566 Female, age 72, unknown 36.6
Nucleus accumbens
nTPM: 40.0
2286 Male, age 75, left hemisphere 42.4
2391 Female, age 94, left hemisphere 41.4
1806 Female, age 85, left hemisphere 40.3
1856 Female, age 91, right hemisphere 39.9
2698 Female, age 72, unknown 39.7
2732 Male, age 80, right hemisphere 39.6
1783 Male, age 74, unknown 38.8
2824 Male, age 61, right hemisphere 38.3
Nucleus basalis of Meynert
nTPM: 38.4
2484 Female, age 94, left hemisphere 39.5
2821 Male, age 75, both hemispheres 39.3
2393 Male, age 80, right hemisphere 38.8
2569 Male, age 61, both hemispheres 35.9
Nucleus of the diagonal band
nTPM: 39.5
1812 Female, age 91, both hemispheres 40.9
2775 Male, age 80, right hemisphere 39.9
1979 Male, age 74, unknown 39.7
2029 Male, age 61, right hemisphere 38.4
2195 Female, age 85, both hemispheres 38.4
Olfactory tubercle
nTPM: 39.2
1846 Male, age 80, right hemisphere 40.3
2856 Male, age 75, right hemisphere 39.2
1998 Female, age 91, both hemispheres 38.8
2487 Female, age 94, left hemisphere 38.5
Putamen
nTPM: 39.1
2482 Female, age 94, left hemisphere 43.7
1838 Male, age 80, right hemisphere 39.6
2466 Female, age 79, unknown 39.6
1937 Female, age 91, right hemisphere 39.4
1829 Male, age 74, unknown 38.6
2489 Female, age 72, unknown 37.8
2647 Male, age 75, left hemisphere 35.4
Septal nuclei
nTPM: 39.2
2629 Female, age 94, right hemisphere 41.1
2031 Female, age 72, unknown 40.6
2009 Female, age 91, both hemispheres 39.8
1960 Male, age 74, unknown 39.2
2199 Male, age 80, right hemisphere 39.0
2059 Female, age 85, both hemispheres 38.3
2394 Male, age 61, left hemisphere 36.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.1
Samples: 246

Max nTPM: 33.8
Min nTPM: 12.5
Std nTPM: 3.1
Median nTPM: 19.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 33.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 33.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 31.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 29.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 27.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 27.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 27.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 27.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 26.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 26.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 25.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.7
Samples: 246

Max nTPM: 30.9
Min nTPM: 13.7
Std nTPM: 3.1
Median nTPM: 19.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 30.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 30.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 30.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 28.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 27.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 27.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 27.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 27.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 26.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 26.0
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 26.0
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Brain - Putamen (basal ganglia)
Average nTPM: 20.4
Samples: 205

Max nTPM: 30.2
Min nTPM: 14.6
Std nTPM: 3.0
Median nTPM: 20.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 30.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 29.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 29.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 29.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 28.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 27.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 27.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 27.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 26.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 25.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 25.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.2
FF:10164-103B2 76 years, female 29.2
Globus pallidus
Scaled Tags Per Million: 20.8
FF:10161-103A8 76 years, female 28.1
FF:10175-103C4 60 years, female 13.4
Nucleus accumbens
Scaled Tags Per Million: 17.7
FF:10037-101F1 23-56 years, mixed 17.7
Putamen
Scaled Tags Per Million: 19.1
FF:10176-103C5 60 years, female 19.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 49.9
Pig sample Sample description nTPM
Caudate
nTPM: 44.0
Samples: 4

Max nTPM: 45.9
Min nTPM: 41.5
Sample A Female 43.5
Sample B Female 45.2
Sample C Male 45.9
Sample D Male 41.5
Putamen
nTPM: 47.2
Samples: 4

Max nTPM: 52.0
Min nTPM: 36.9
Sample A Female 50.1
Sample B Female 36.9
Sample C Male 52.0
Sample D Male 49.9
Septum
nTPM: 49.9
Samples: 4

Max nTPM: 57.9
Min nTPM: 41.8
Sample A Female 54.4
Sample B Female 41.8
Sample C Male 57.9
Sample D Male 45.5
Ventral pallidum
nTPM: 41.3
Samples: 4

Max nTPM: 45.1
Min nTPM: 37.2
Sample A Female 38.5
Sample B Female 45.1
Sample C Male 37.2
Sample D Male 44.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.9
Samples: 4

Max nTPM: 42.2
Min nTPM: 36.2
Sample A Male 40.5
Sample B Male 36.2
Sample C Female 40.6
Sample D Female 42.2
Septum
nTPM: 39.0
Samples: 4

Max nTPM: 41.1
Min nTPM: 36.1
Sample A Male 36.1
Sample B Male 40.8
Sample C Female 37.8
Sample D Female 41.1
Ventral forebrain
nTPM: 36.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 33.6
Sample A Male 33.6
Sample B Male 35.9
Sample C Female 38.8
Sample D Female 37.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68269289 Antisense, RP_041129_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68269289 Antisense, RP_041129_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.