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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:5.6 nTPM
HPA:5.6 nTPM
GTEx:9.0 nTPM
FANTOM5:4.3 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:20.2 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041710Antibody HPA041796
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Hippocampus
nTPM: 5.3
1898 Male, age 80, left hemisphere 6.1
2148 Female, age 91, left hemisphere 6.0
1855 Male, age 76, left hemisphere 5.3
1911 Female, age 85, right hemisphere 4.9
2621 Female, age 67, right hemisphere 4.9
2529 Female, age 94, left hemisphere 4.6
Dentate gyrus
nTPM: 5.4
2010 Male, age 76, both hemispheres 5.8
1927 Female, age 91, both hemispheres 5.5
2531 Female, age 67, both hemispheres 5.3
2246 Female, age 85, both hemispheres 5.2
2528 Male, age 74, both hemispheres 5.1
2530 Female, age 94, left hemisphere 5.1
Entorhinal gyrus
nTPM: 5.1
1787 Male, age 76, left hemisphere 5.5
2613 Female, age 94, left hemisphere 5.3
2117 Female, age 91, right hemisphere 5.0
2764 Male, age 80, right hemisphere 5.0
2686 Male, age 75, right hemisphere 4.9
1938 Female, age 85, left hemisphere 4.7
Hippocampus, CA1
nTPM: 5.4
2045 Male, age 76, both hemispheres 7.1
2749 Male, age 80, left hemisphere 5.6
1873 Female, age 85, both hemispheres 4.9
2082 Female, age 91, right hemisphere 4.9
2527 Male, age 74, both hemispheres 4.6
Hippocampus, CA2
nTPM: 5.2
1892 Male, age 76, both hemispheres 6.0
1963 Male, age 80, left hemisphere 5.7
2437 Female, age 94, left hemisphere 5.2
2249 Male, age 74, both hemispheres 5.0
2113 Female, age 91, right hemisphere 4.9
1940 Female, age 85, left hemisphere 4.5
Hippocampus, CA3
nTPM: 5.6
2620 Female, age 94, left hemisphere 6.6
1867 Male, age 76, both hemispheres 6.0
2861 Female, age 67, both hemispheres 5.8
2137 Male, age 80, left hemisphere 5.5
1891 Female, age 85, both hemispheres 4.9
2436 Male, age 74, both hemispheres 4.8
Parahippocampal cortex
nTPM: 4.6
1933 Female, age 85, both hemispheres 5.1
2250 Female, age 67, right hemisphere 5.0
2018 Male, age 76, both hemispheres 4.8
2245 Female, age 91, both hemispheres 4.7
2532 Female, age 72, left hemisphere 4.7
1990 Female, age 91, right hemisphere 4.6
2693 Female, age 94, both hemispheres 4.6
1850 Male, age 80, both hemispheres 4.3
2692 Male, age 74, both hemispheres 4.3
2622 Female, age 67, right hemisphere 4.1
Perirhinal gyrus
nTPM: 4.7
1847 Female, age 91, left hemisphere 5.0
1794 Male, age 80, right hemisphere 4.8
1841 Female, age 85, right hemisphere 4.7
2521 Female, age 94, right hemisphere 4.7
2848 Male, age 76, right hemisphere 4.6
Subiculum
nTPM: 4.9
1901 Male, age 80, both hemispheres 5.4
1977 Female, age 85, both hemispheres 5.2
2729 Female, age 91, right hemisphere 5.0
2619 Male, age 74, both hemispheres 4.8
2438 Female, age 94, left hemisphere 4.5
2042 Male, age 76, both hemispheres 4.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.0
Samples: 197

Max nTPM: 24.6
Min nTPM: 2.5
Std nTPM: 3.1
Median nTPM: 8.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 24.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 17.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 17.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 16.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 15.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 15.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 15.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 15.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 15.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 15.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 14.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 4.3
FF:10153-102I9 76 years, female 6.6
FF:10169-103B7 60 years, female 2.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 2.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1.6
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.5
Sample A Female 1.7
Sample B Female 1.5
Sample C Male 1.5
Sample D Male 1.6
Entorhinal cortex
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 2.2
Sample C Male 1.6
Sample D Male 2.0
Subiculum
nTPM: 2.2
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.8
Sample A Female 2.3
Sample B Female 2.4
Sample C Male 2.2
Sample D Male 1.8
Ventral hippocampus
nTPM: 2.2
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 2.5
Sample C Male 3.0
Sample D Male 1.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.2
Samples: 4

Max nTPM: 21.5
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 20.4
Sample C Female 21.5
Sample D Female 19.6
Hippocampal formation
nTPM: 19.8
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.5
Sample A Male 20.9
Sample B Male 19.8
Sample C Female 16.5
Sample D Female 21.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
69080065 Antisense, RP_050324_01_H04, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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