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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.0 nTPM
HPA:86.0 nTPM
GTEx:115.7 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:2061.3 nTPM
Mouse:17.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.6
2666 Male, age 74, left hemisphere 11.3
2019 Male, age 18, unknown 8.5
2219 Male, age 76, both hemispheres 8.1
1830 Male, age 51, unknown 7.4
1833 Male, age 53, unknown 7.3
2828 Female, age 72, unknown 6.3
2586 Male, age 75, left hemisphere 2.4
1827 Male, age 72, unknown 2.1
2411 Female, age 72, unknown 2.1
1870 Female, age 42, unknown 0.0
Dorsal raphe nucleus
nTPM: 12.6
2298 Female, age 72, unknown 44.6
1828 Male, age 53, unknown 6.6
2750 Male, age 76, both hemispheres 4.5
2016 Female, age 72, unknown 3.8
2047 Male, age 72, unknown 3.4
Inferior colliculus
nTPM: 18.9
1890 Male, age 53, unknown 38.0
2849 Male, age 72, unknown 31.5
2097 Female, age 72, unknown 4.2
1848 Female, age 42, unknown 1.8
Median raphe nucleus
nTPM: 2.7
2220 Male, age 76, midline 2.7
Pedunculopontine tegmental nucleus
nTPM: 4.6
2338 Male, age 61, both hemispheres 5.6
2334 Male, age 80, both hemispheres 4.9
1921 Female, age 85, both hemispheres 3.4
Periaquaductal grey, anterior
nTPM: 7.4
1795 Male, age 51, unknown 19.7
1947 Male, age 18, unknown 2.7
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 26.1
1831 Male, age 72, unknown 51.6
2464 Female, age 72, unknown 37.2
2850 Male, age 76, both hemispheres 9.1
1840 Male, age 53, unknown 6.6
Periaquaductal grey, lateral
nTPM: 86.0
2272 Male, age 74, both hemispheres 211.5
2053 Male, age 18, unknown 40.9
2140 Male, age 76, both hemispheres 5.5
Pretectal area
nTPM: 11.4
2273 Male, age 74, both hemispheres 41.6
2667 Female, age 75, unknown 26.5
1815 Male, age 53, unknown 23.7
2316 Male, age 76, right hemisphere 7.9
2224 Female, age 72, unknown 7.0
2407 Male, age 75, both hemispheres 5.4
2825 Male, age 18, unknown 5.3
1816 Male, age 51, unknown 4.3
1944 Female, age 72, unknown 3.5
1817 Female, age 42, unknown 0.0
2007 Male, age 72, unknown 0.0
Red nucleus
nTPM: 14.3
1821 Female, age 72, unknown 52.3
2588 Male, age 74, left hemisphere 46.6
2725 Female, age 75, unknown 16.1
2785 Male, age 18, unknown 14.0
1865 Male, age 51, unknown 9.2
2769 Male, age 72, unknown 8.8
2823 Male, age 76, right hemisphere 7.0
1954 Female, age 42, unknown 5.1
1904 Male, age 53, unknown 4.4
2584 Male, age 75, left hemisphere 4.0
2227 Male, age 72, unknown 3.5
2503 Female, age 72, unknown 0.3
Substantia nigra
nTPM: 5.4
2409 Female, age 72, unknown 13.4
1889 Female, age 72, unknown 9.0
2665 Male, age 74, both hemispheres 6.1
2699 Male, age 18, unknown 5.2
1941 Male, age 53, unknown 4.9
1851 Male, age 51, unknown 4.6
2241 Male, age 72, unknown 4.2
2583 Male, age 75, right hemisphere 3.6
1916 Female, age 42, unknown 2.0
2590 Female, age 75, unknown 0.5
Superior colliculus
nTPM: 20.3
2587 Male, age 74, left hemisphere 116.8
1995 Male, age 72, unknown 28.5
2261 Male, age 18, unknown 12.0
2668 Female, age 75, unknown 11.9
2087 Female, age 72, unknown 8.3
1895 Male, age 76, right hemisphere 7.7
1839 Male, age 51, unknown 6.0
1796 Male, age 53, unknown 4.3
1913 Female, age 42, unknown 3.9
2664 Male, age 75, both hemispheres 3.8
Ventral tegmental area
nTPM: 8.2
1915 Female, age 42, unknown 16.8
2223 Female, age 72, unknown 15.0
2021 Male, age 53, unknown 8.2
2218 Male, age 76, both hemispheres 6.1
1942 Male, age 51, unknown 3.4
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 115.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.7
Samples: 139

Max nTPM: 1483.9
Min nTPM: 0.2
Std nTPM: 250.5
Median nTPM: 23.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1483.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 1193.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1091.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1055.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 831.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 819.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 796.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 719.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 655.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 635.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 523.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 2061.3
Pig sample Sample description nTPM
Midbrain
nTPM: 155.7
Samples: 4

Max nTPM: 341.7
Min nTPM: 52.7
Sample A Female 132.2
Sample B Female 341.7
Sample C Male 96.3
Sample D Male 52.7
Periaqueductal gray
nTPM: 104.1
Samples: 3

Max nTPM: 195.0
Min nTPM: 11.7
Sample B Female 195.0
Sample C Male 11.7
Sample D Male 105.7
Substantia nigra
nTPM: 260.5
Samples: 4

Max nTPM: 509.3
Min nTPM: 135.8
Sample A Female 240.5
Sample B Female 509.3
Sample C Male 135.8
Sample D Male 156.2
Superior colliculi
nTPM: 2061.4
Samples: 4

Max nTPM: 8037.4
Min nTPM: 17.0
Sample A Female 96.0
Sample B Female 8037.4
Sample C Male 17.0
Sample D Male 95.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 50.5
Min nTPM: 1.7
Sample A Male 50.5
Sample B Male 1.7
Sample C Female 12.4
Sample D Female 7.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68632172 Antisense, RP_050125_01_G11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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