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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:25.8 nTPM
HPA:25.8 nTPM
GTEx:22.9 nTPM
FANTOM5:78.3 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:31.1 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031075Antibody CAB005123
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.8
Sample id Sample description nTPM
Hippocampus
nTPM: 14.3
2529 Female, age 94, left hemisphere 15.9
2621 Female, age 67, right hemisphere 15.5
1911 Female, age 85, right hemisphere 15.3
1855 Male, age 76, left hemisphere 15.1
1898 Male, age 80, left hemisphere 12.0
2148 Female, age 91, left hemisphere 12.0
Dentate gyrus
nTPM: 14.7
2010 Male, age 76, both hemispheres 21.0
2530 Female, age 94, left hemisphere 17.3
2246 Female, age 85, both hemispheres 13.7
2531 Female, age 67, both hemispheres 12.6
2528 Male, age 74, both hemispheres 12.0
1927 Female, age 91, both hemispheres 11.8
Entorhinal gyrus
nTPM: 25.8
1938 Female, age 85, left hemisphere 41.6
2613 Female, age 94, left hemisphere 36.6
1787 Male, age 76, left hemisphere 28.5
2764 Male, age 80, right hemisphere 17.6
2686 Male, age 75, right hemisphere 17.1
2117 Female, age 91, right hemisphere 13.2
Hippocampus, CA1
nTPM: 14.3
2749 Male, age 80, left hemisphere 18.6
2082 Female, age 91, right hemisphere 13.9
2527 Male, age 74, both hemispheres 13.9
2045 Male, age 76, both hemispheres 13.0
1873 Female, age 85, both hemispheres 11.9
Hippocampus, CA2
nTPM: 16.8
2249 Male, age 74, both hemispheres 25.1
1892 Male, age 76, both hemispheres 17.4
1940 Female, age 85, left hemisphere 16.9
2113 Female, age 91, right hemisphere 14.1
1963 Male, age 80, left hemisphere 13.6
2437 Female, age 94, left hemisphere 13.6
Hippocampus, CA3
nTPM: 18.3
1867 Male, age 76, both hemispheres 31.0
2137 Male, age 80, left hemisphere 18.7
1891 Female, age 85, both hemispheres 16.2
2861 Female, age 67, both hemispheres 16.2
2436 Male, age 74, both hemispheres 14.3
2620 Female, age 94, left hemisphere 13.2
Parahippocampal cortex
nTPM: 16.6
1990 Female, age 91, right hemisphere 25.3
1933 Female, age 85, both hemispheres 20.6
2692 Male, age 74, both hemispheres 19.5
1850 Male, age 80, both hemispheres 17.3
2018 Male, age 76, both hemispheres 17.0
2532 Female, age 72, left hemisphere 15.6
2622 Female, age 67, right hemisphere 15.1
2245 Female, age 91, both hemispheres 13.4
2693 Female, age 94, both hemispheres 11.4
2250 Female, age 67, right hemisphere 10.9
Perirhinal gyrus
nTPM: 16.6
1847 Female, age 91, left hemisphere 24.0
2848 Male, age 76, right hemisphere 17.5
1841 Female, age 85, right hemisphere 16.3
2521 Female, age 94, right hemisphere 13.3
1794 Male, age 80, right hemisphere 11.9
Subiculum
nTPM: 20.2
2042 Male, age 76, both hemispheres 36.3
1977 Female, age 85, both hemispheres 27.4
1901 Male, age 80, both hemispheres 15.8
2619 Male, age 74, both hemispheres 15.2
2438 Female, age 94, left hemisphere 15.1
2729 Female, age 91, right hemisphere 11.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.9
Samples: 197

Max nTPM: 313.9
Min nTPM: 2.2
Std nTPM: 27.0
Median nTPM: 16.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 313.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 115.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 82.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 76.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 71.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 71.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 70.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 70.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 66.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 62.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 61.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.3
FF:10169-103B7 60 years, female 104.6
FF:10153-102I9 76 years, female 52.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.0
Samples: 4

Max nTPM: 23.3
Min nTPM: 4.5
Sample A Female 13.8
Sample B Female 18.3
Sample C Male 23.3
Sample D Male 4.5
Entorhinal cortex
nTPM: 12.2
Samples: 4

Max nTPM: 15.0
Min nTPM: 5.2
Sample A Female 15.0
Sample B Female 14.7
Sample C Male 13.8
Sample D Male 5.2
Subiculum
nTPM: 15.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 10.6
Sample C Male 19.3
Sample D Male 24.8
Ventral hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 22.5
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 9.4
Sample C Male 22.5
Sample D Male 13.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 23.6
Sample A Male 23.6
Sample B Male 32.5
Sample C Female 31.5
Sample D Female 36.8
Hippocampal formation
nTPM: 8.8
Samples: 4

Max nTPM: 14.9
Min nTPM: 4.0
Sample A Male 11.7
Sample B Male 4.0
Sample C Female 4.7
Sample D Female 14.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
79556634 Antisense, RP_071204_01_A01, Mouse strain C57BL/6J (56 days, male) 2.3
79632240 Antisense, RP_071204_01_A01, Mouse strain C57BL/6J (56 days, male) 1.9
1183 Antisense, RP_040407_02_H07, Mouse strain C57BL/6J (56 days, male) 1.4
1184 Antisense, RP_040407_02_H07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.