ABOUTMENU
HELP
NEWS
OLFM3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:6.0 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:38.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.1
1781 Male, age 74, unknown 1.2
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 1.1
2392 Female, age 94, both hemispheres 3.4
2491 Male, age 75, both hemispheres 3.0
1956 Male, age 74, unknown 1.8
2284 Female, age 91, both hemispheres 1.8
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.2
1856 Female, age 91, right hemisphere 2.1
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 3.6
2029 Male, age 61, right hemisphere 7.5
1812 Female, age 91, both hemispheres 7.3
2775 Male, age 80, right hemisphere 3.4
1979 Male, age 74, unknown 0.0
2195 Female, age 85, both hemispheres 0.0
Olfactory tubercle
nTPM: 5.0
1998 Female, age 91, both hemispheres 8.7
2487 Female, age 94, left hemisphere 4.1
1846 Male, age 80, right hemisphere 3.7
2856 Male, age 75, right hemisphere 3.3
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 2.3
2031 Female, age 72, unknown 8.4
2629 Female, age 94, right hemisphere 3.8
2009 Female, age 91, both hemispheres 3.3
1960 Male, age 74, unknown 0.4
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.8
Samples: 246

Max nTPM: 30.8
Min nTPM: 0.0
Std nTPM: 3.5
Median nTPM: 3.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 30.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 23.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 14.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 12.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 11.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 11.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 10.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 10.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 10.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 10.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 9.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.0
Samples: 246

Max nTPM: 22.1
Min nTPM: 0.0
Std nTPM: 4.1
Median nTPM: 5.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 22.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 20.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 18.4
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 18.0
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 16.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 16.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 15.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 13.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 13.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 13.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 13.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 3.2
Samples: 205

Max nTPM: 15.3
Min nTPM: 0.0
Std nTPM: 2.8
Median nTPM: 2.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 15.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 13.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 13.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 11.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 10.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 10.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 10.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 9.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 9.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 9.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.5
FF:10164-103B2 76 years, female 29.5
Globus pallidus
Scaled Tags Per Million: 6.4
FF:10175-103C4 60 years, female 10.2
FF:10161-103A8 76 years, female 2.7
Nucleus accumbens
Scaled Tags Per Million: 54.9
FF:10037-101F1 23-56 years, mixed 54.9
Putamen
Scaled Tags Per Million: 47.0
FF:10176-103C5 60 years, female 47.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Caudate
nTPM: 5.8
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.2
Sample A Female 6.7
Sample B Female 4.2
Sample C Male 4.9
Sample D Male 7.2
Putamen
nTPM: 13.5
Samples: 4

Max nTPM: 27.3
Min nTPM: 8.4
Sample A Female 9.8
Sample B Female 8.4
Sample C Male 27.3
Sample D Male 8.6
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 24.2
Min nTPM: 6.9
Sample A Female 9.0
Sample B Female 11.9
Sample C Male 24.2
Sample D Male 6.9
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 23.3
Min nTPM: 5.7
Sample A Female 6.2
Sample B Female 15.3
Sample C Male 23.3
Sample D Male 5.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.2
Samples: 4

Max nTPM: 23.9
Min nTPM: 15.5
Sample A Male 18.0
Sample B Male 15.5
Sample C Female 23.9
Sample D Female 23.2
Septum
nTPM: 30.8
Samples: 4

Max nTPM: 36.0
Min nTPM: 26.7
Sample A Male 36.0
Sample B Male 28.9
Sample C Female 31.6
Sample D Female 26.7
Ventral forebrain
nTPM: 38.1
Samples: 4

Max nTPM: 41.2
Min nTPM: 32.5
Sample A Male 32.5
Sample B Male 41.2
Sample C Female 40.8
Sample D Female 37.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.