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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:148.1 nTPM
HPA:148.1 nTPM
GTEx:138.6 nTPM
FANTOM5:255.6 Scaled Tags Per Million
Pig:222.1 nTPM
Mouse:195.2 nTPM
Allen mouse:12.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039853Antibody CAB010206
Glial cells Not detectedLow
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 148.1
Sample id Sample description nTPM
Hippocampus
nTPM: 138.1
2529 Female, age 94, left hemisphere 157.2
1898 Male, age 80, left hemisphere 151.7
2621 Female, age 67, right hemisphere 137.0
1855 Male, age 76, left hemisphere 132.6
2148 Female, age 91, left hemisphere 130.1
1911 Female, age 85, right hemisphere 120.0
Dentate gyrus
nTPM: 147.0
2530 Female, age 94, left hemisphere 229.3
2010 Male, age 76, both hemispheres 146.9
1927 Female, age 91, both hemispheres 134.5
2531 Female, age 67, both hemispheres 131.5
2528 Male, age 74, both hemispheres 123.9
2246 Female, age 85, both hemispheres 115.8
Entorhinal gyrus
nTPM: 148.1
2686 Male, age 75, right hemisphere 157.7
1787 Male, age 76, left hemisphere 150.1
2613 Female, age 94, left hemisphere 146.2
2764 Male, age 80, right hemisphere 146.0
2117 Female, age 91, right hemisphere 145.9
1938 Female, age 85, left hemisphere 142.7
Hippocampus, CA1
nTPM: 126.8
2749 Male, age 80, left hemisphere 152.9
1873 Female, age 85, both hemispheres 135.3
2527 Male, age 74, both hemispheres 130.2
2082 Female, age 91, right hemisphere 111.4
2045 Male, age 76, both hemispheres 104.1
Hippocampus, CA2
nTPM: 144.6
1963 Male, age 80, left hemisphere 185.0
2437 Female, age 94, left hemisphere 153.5
1892 Male, age 76, both hemispheres 150.7
1940 Female, age 85, left hemisphere 136.2
2249 Male, age 74, both hemispheres 124.1
2113 Female, age 91, right hemisphere 118.1
Hippocampus, CA3
nTPM: 123.7
2861 Female, age 67, both hemispheres 141.3
1867 Male, age 76, both hemispheres 136.2
1891 Female, age 85, both hemispheres 125.5
2137 Male, age 80, left hemisphere 123.8
2436 Male, age 74, both hemispheres 112.3
2620 Female, age 94, left hemisphere 103.3
Parahippocampal cortex
nTPM: 145.0
2532 Female, age 72, left hemisphere 172.6
1850 Male, age 80, both hemispheres 159.8
1990 Female, age 91, right hemisphere 150.5
2250 Female, age 67, right hemisphere 146.1
2622 Female, age 67, right hemisphere 144.4
2245 Female, age 91, both hemispheres 141.8
2692 Male, age 74, both hemispheres 140.7
2018 Male, age 76, both hemispheres 134.6
2693 Female, age 94, both hemispheres 129.6
1933 Female, age 85, both hemispheres 129.4
Perirhinal gyrus
nTPM: 146.1
1794 Male, age 80, right hemisphere 156.9
1841 Female, age 85, right hemisphere 156.4
2848 Male, age 76, right hemisphere 143.0
2521 Female, age 94, right hemisphere 140.1
1847 Female, age 91, left hemisphere 133.9
Subiculum
nTPM: 135.5
2438 Female, age 94, left hemisphere 158.1
1901 Male, age 80, both hemispheres 139.6
2619 Male, age 74, both hemispheres 136.9
1977 Female, age 85, both hemispheres 132.8
2042 Male, age 76, both hemispheres 128.6
2729 Female, age 91, right hemisphere 116.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 138.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 138.6
Samples: 197

Max nTPM: 360.1
Min nTPM: 72.1
Std nTPM: 46.1
Median nTPM: 125.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 360.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 309.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 309.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 281.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 272.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 263.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 249.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 236.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 227.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 217.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 216.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 255.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 255.6
FF:10153-102I9 76 years, female 261.2
FF:10169-103B7 60 years, female 250.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 222.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 222.1
Samples: 4

Max nTPM: 288.1
Min nTPM: 148.1
Sample A Female 288.1
Sample B Female 199.8
Sample C Male 252.3
Sample D Male 148.1
Entorhinal cortex
nTPM: 209.0
Samples: 4

Max nTPM: 256.5
Min nTPM: 185.7
Sample A Female 185.7
Sample B Female 256.5
Sample C Male 201.1
Sample D Male 192.8
Subiculum
nTPM: 189.5
Samples: 4

Max nTPM: 247.0
Min nTPM: 154.5
Sample A Female 247.0
Sample B Female 188.9
Sample C Male 167.5
Sample D Male 154.5
Ventral hippocampus
nTPM: 202.2
Samples: 4

Max nTPM: 234.1
Min nTPM: 165.8
Sample A Female 218.9
Sample B Female 165.8
Sample C Male 234.1
Sample D Male 189.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 195.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 195.2
Samples: 4

Max nTPM: 203.4
Min nTPM: 184.7
Sample A Male 203.4
Sample B Male 200.5
Sample C Female 184.7
Sample D Female 192.0
Hippocampal formation
nTPM: 182.6
Samples: 4

Max nTPM: 194.3
Min nTPM: 169.9
Sample A Male 189.9
Sample B Male 176.4
Sample C Female 194.3
Sample D Female 169.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.7
70445658 Antisense, RP_050614_04_C09, Mouse strain C57BL/6J (56 days, male) 15.8
74988529 Antisense, RP_060315_05_E08, Mouse strain C57BL/6J (56 days, male) 9.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.