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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:24.4 nTPM
FANTOM5:28.5 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:144.3 nTPM
Allen mouse:8.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.3
1781 Male, age 74, unknown 22.5
2846 Female, age 79, unknown 22.4
2481 Female, age 94, left hemisphere 18.6
2288 Male, age 75, left hemisphere 18.1
1857 Female, age 85, left hemisphere 17.5
2289 Male, age 61, right hemisphere 17.1
2290 Female, age 72, unknown 16.1
1854 Male, age 80, left hemisphere 13.8
Claustrum
nTPM: 10.3
2196 Female, age 79, unknown 12.8
2568 Male, age 61, both hemispheres 12.8
1956 Male, age 74, unknown 11.5
2392 Female, age 94, both hemispheres 11.1
2491 Male, age 75, both hemispheres 10.9
2284 Female, age 91, both hemispheres 9.0
2198 Male, age 80, both hemispheres 8.9
2645 Female, age 72, unknown 8.0
2292 Female, age 85, both hemispheres 7.9
Globus pallidus, externus
nTPM: 17.6
1996 Male, age 80, right hemisphere 22.0
2646 Male, age 61, right hemisphere 17.3
2395 Male, age 75, both hemispheres 16.3
2567 Female, age 72, unknown 16.3
2772 Female, age 79, unknown 16.1
Globus pallidus, internus
nTPM: 19.6
2778 Female, age 91, both hemispheres 27.1
2287 Male, age 75, right hemisphere 22.7
2111 Female, age 85, right hemisphere 19.9
2037 Male, age 80, right hemisphere 19.6
2483 Female, age 94, right hemisphere 17.4
2566 Female, age 72, unknown 15.6
1818 Male, age 74, unknown 14.6
Nucleus accumbens
nTPM: 15.4
2824 Male, age 61, right hemisphere 20.1
1783 Male, age 74, unknown 18.2
1856 Female, age 91, right hemisphere 15.8
1806 Female, age 85, left hemisphere 15.7
2286 Male, age 75, left hemisphere 15.0
2698 Female, age 72, unknown 13.6
2391 Female, age 94, left hemisphere 13.1
2732 Male, age 80, right hemisphere 11.1
Nucleus basalis of Meynert
nTPM: 18.7
2484 Female, age 94, left hemisphere 21.2
2569 Male, age 61, both hemispheres 20.2
2393 Male, age 80, right hemisphere 18.6
2821 Male, age 75, both hemispheres 15.0
Nucleus of the diagonal band
nTPM: 11.9
2029 Male, age 61, right hemisphere 15.9
1812 Female, age 91, both hemispheres 12.8
1979 Male, age 74, unknown 12.1
2195 Female, age 85, both hemispheres 9.8
2775 Male, age 80, right hemisphere 9.0
Olfactory tubercle
nTPM: 10.1
2856 Male, age 75, right hemisphere 11.7
1846 Male, age 80, right hemisphere 9.6
1998 Female, age 91, both hemispheres 9.6
2487 Female, age 94, left hemisphere 9.3
Putamen
nTPM: 22.1
2466 Female, age 79, unknown 27.2
1829 Male, age 74, unknown 26.8
2489 Female, age 72, unknown 25.0
2647 Male, age 75, left hemisphere 23.4
1838 Male, age 80, right hemisphere 18.2
1937 Female, age 91, right hemisphere 17.2
2482 Female, age 94, left hemisphere 16.7
Septal nuclei
nTPM: 10.4
2199 Male, age 80, right hemisphere 14.3
1960 Male, age 74, unknown 10.7
2031 Female, age 72, unknown 10.7
2394 Male, age 61, left hemisphere 10.1
2629 Female, age 94, right hemisphere 9.4
2009 Female, age 91, both hemispheres 9.2
2059 Female, age 85, both hemispheres 8.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.0
Samples: 246

Max nTPM: 51.8
Min nTPM: 9.7
Std nTPM: 7.0
Median nTPM: 19.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 51.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 51.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 41.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 39.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 39.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 38.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 38.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 37.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 37.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 35.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 33.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.7
Samples: 246

Max nTPM: 41.9
Min nTPM: 4.8
Std nTPM: 5.4
Median nTPM: 16.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 41.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 33.5
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 32.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 30.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 30.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 28.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 28.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 27.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 27.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 27.0
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 26.5
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Brain - Putamen (basal ganglia)
Average nTPM: 24.4
Samples: 205

Max nTPM: 46.9
Min nTPM: 5.6
Std nTPM: 7.7
Median nTPM: 23.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 46.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 44.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 44.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 44.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 44.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 42.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 42.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 42.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 40.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 39.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 39.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.0
FF:10164-103B2 76 years, female 16.0
Globus pallidus
Scaled Tags Per Million: 28.5
FF:10161-103A8 76 years, female 32.7
FF:10175-103C4 60 years, female 24.4
Nucleus accumbens
Scaled Tags Per Million: 6.6
FF:10037-101F1 23-56 years, mixed 6.6
Putamen
Scaled Tags Per Million: 19.8
FF:10176-103C5 60 years, female 19.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Caudate
nTPM: 24.1
Samples: 4

Max nTPM: 31.9
Min nTPM: 17.3
Sample A Female 17.3
Sample B Female 24.0
Sample C Male 31.9
Sample D Male 23.0
Putamen
nTPM: 37.0
Samples: 4

Max nTPM: 59.9
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 36.0
Sample C Male 59.9
Sample D Male 31.2
Septum
nTPM: 21.1
Samples: 4

Max nTPM: 25.5
Min nTPM: 16.7
Sample A Female 16.7
Sample B Female 25.5
Sample C Male 17.4
Sample D Male 24.6
Ventral pallidum
nTPM: 25.7
Samples: 4

Max nTPM: 39.1
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 39.1
Sample C Male 25.1
Sample D Male 19.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 144.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 144.3
Samples: 4

Max nTPM: 154.1
Min nTPM: 135.0
Sample A Male 145.9
Sample B Male 135.0
Sample C Female 154.1
Sample D Female 142.1
Septum
nTPM: 77.6
Samples: 4

Max nTPM: 84.5
Min nTPM: 63.7
Sample A Male 63.7
Sample B Male 78.2
Sample C Female 84.5
Sample D Female 84.1
Ventral forebrain
nTPM: 106.7
Samples: 4

Max nTPM: 119.3
Min nTPM: 94.2
Sample A Male 102.1
Sample B Male 94.2
Sample C Female 119.3
Sample D Female 111.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.9
70593169 Antisense, RP_050407_01_F05, Mouse strain C57BL/6J (56 days, male) 11.8
70795847 Antisense, RP_050712_02_B02, Mouse strain C57BL/6J (56 days, male) 6.0
Pallidum
Expression energy: 3.0
70593169 Antisense, RP_050407_01_F05, Mouse strain C57BL/6J (56 days, male) 4.4
70795847 Antisense, RP_050712_02_B02, Mouse strain C57BL/6J (56 days, male) 1.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.