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CPSF3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:10.2 nTPM
HPA:10.2 nTPM
GTEx:9.3 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:33.2 nTPM
Allen mouse:5.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034657
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Hippocampus
nTPM: 9.6
1898 Male, age 80, left hemisphere 10.5
2621 Female, age 67, right hemisphere 10.1
2529 Female, age 94, left hemisphere 10.0
1855 Male, age 76, left hemisphere 9.2
1911 Female, age 85, right hemisphere 8.9
2148 Female, age 91, left hemisphere 8.7
Dentate gyrus
nTPM: 9.3
2010 Male, age 76, both hemispheres 9.9
2530 Female, age 94, left hemisphere 9.7
1927 Female, age 91, both hemispheres 9.6
2528 Male, age 74, both hemispheres 9.3
2246 Female, age 85, both hemispheres 8.8
2531 Female, age 67, both hemispheres 8.4
Entorhinal gyrus
nTPM: 9.0
1938 Female, age 85, left hemisphere 9.6
2117 Female, age 91, right hemisphere 9.5
2764 Male, age 80, right hemisphere 9.2
1787 Male, age 76, left hemisphere 8.7
2613 Female, age 94, left hemisphere 8.5
2686 Male, age 75, right hemisphere 8.3
Hippocampus, CA1
nTPM: 9.3
1873 Female, age 85, both hemispheres 9.9
2749 Male, age 80, left hemisphere 9.6
2527 Male, age 74, both hemispheres 9.5
2045 Male, age 76, both hemispheres 8.7
2082 Female, age 91, right hemisphere 8.6
Hippocampus, CA2
nTPM: 10.2
1892 Male, age 76, both hemispheres 12.3
1963 Male, age 80, left hemisphere 10.6
2249 Male, age 74, both hemispheres 10.4
1940 Female, age 85, left hemisphere 9.7
2437 Female, age 94, left hemisphere 9.5
2113 Female, age 91, right hemisphere 8.9
Hippocampus, CA3
nTPM: 9.1
1867 Male, age 76, both hemispheres 10.8
1891 Female, age 85, both hemispheres 10.2
2436 Male, age 74, both hemispheres 8.8
2137 Male, age 80, left hemisphere 8.6
2620 Female, age 94, left hemisphere 8.3
2861 Female, age 67, both hemispheres 8.0
Parahippocampal cortex
nTPM: 9.4
1850 Male, age 80, both hemispheres 10.5
2532 Female, age 72, left hemisphere 10.4
1990 Female, age 91, right hemisphere 9.7
1933 Female, age 85, both hemispheres 9.5
2692 Male, age 74, both hemispheres 9.5
2018 Male, age 76, both hemispheres 9.3
2250 Female, age 67, right hemisphere 9.3
2245 Female, age 91, both hemispheres 8.9
2693 Female, age 94, both hemispheres 8.6
2622 Female, age 67, right hemisphere 8.2
Perirhinal gyrus
nTPM: 9.5
1841 Female, age 85, right hemisphere 10.1
1794 Male, age 80, right hemisphere 9.9
1847 Female, age 91, left hemisphere 9.8
2521 Female, age 94, right hemisphere 9.0
2848 Male, age 76, right hemisphere 8.8
Subiculum
nTPM: 9.9
2438 Female, age 94, left hemisphere 11.1
1977 Female, age 85, both hemispheres 10.2
2042 Male, age 76, both hemispheres 9.9
1901 Male, age 80, both hemispheres 9.4
2619 Male, age 74, both hemispheres 9.4
2729 Female, age 91, right hemisphere 9.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.3
Samples: 197

Max nTPM: 16.0
Min nTPM: 4.2
Std nTPM: 1.8
Median nTPM: 9.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 16.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 15.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 13.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 13.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 13.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 12.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 12.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 12.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 12.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 12.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 12.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.1
FF:10169-103B7 60 years, female 18.8
FF:10153-102I9 76 years, female 17.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.3
Samples: 4

Max nTPM: 37.3
Min nTPM: 26.4
Sample A Female 37.3
Sample B Female 29.7
Sample C Male 31.9
Sample D Male 26.4
Entorhinal cortex
nTPM: 25.3
Samples: 4

Max nTPM: 28.0
Min nTPM: 23.6
Sample A Female 28.0
Sample B Female 25.5
Sample C Male 24.2
Sample D Male 23.6
Subiculum
nTPM: 25.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 23.1
Sample A Female 28.0
Sample B Female 23.1
Sample C Male 23.7
Sample D Male 25.3
Ventral hippocampus
nTPM: 27.3
Samples: 4

Max nTPM: 34.4
Min nTPM: 19.8
Sample A Female 26.7
Sample B Female 19.8
Sample C Male 28.2
Sample D Male 34.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.4
Samples: 4

Max nTPM: 34.0
Min nTPM: 28.0
Sample A Male 29.2
Sample B Male 30.4
Sample C Female 34.0
Sample D Female 28.0
Hippocampal formation
nTPM: 33.2
Samples: 4

Max nTPM: 35.1
Min nTPM: 30.7
Sample A Male 34.9
Sample B Male 30.7
Sample C Female 32.1
Sample D Female 35.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.9
68637629 Antisense, RP_050126_01_C08, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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