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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:24.3 nTPM
HPA:24.3 nTPM
GTEx:132.8 nTPM
FANTOM5:81.3 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:52.0 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038560
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.3
Sample id Sample description nTPM
Hippocampus
nTPM: 18.5
2621 Female, age 67, right hemisphere 27.3
2148 Female, age 91, left hemisphere 24.8
1898 Male, age 80, left hemisphere 18.2
1911 Female, age 85, right hemisphere 15.9
1855 Male, age 76, left hemisphere 15.4
2529 Female, age 94, left hemisphere 9.4
Dentate gyrus
nTPM: 15.5
2531 Female, age 67, both hemispheres 26.4
1927 Female, age 91, both hemispheres 19.2
2528 Male, age 74, both hemispheres 14.6
2010 Male, age 76, both hemispheres 13.6
2530 Female, age 94, left hemisphere 10.0
2246 Female, age 85, both hemispheres 9.3
Entorhinal gyrus
nTPM: 20.0
2613 Female, age 94, left hemisphere 34.1
2764 Male, age 80, right hemisphere 31.4
1938 Female, age 85, left hemisphere 19.0
2686 Male, age 75, right hemisphere 15.0
1787 Male, age 76, left hemisphere 11.6
2117 Female, age 91, right hemisphere 8.8
Hippocampus, CA1
nTPM: 22.8
2749 Male, age 80, left hemisphere 36.1
2045 Male, age 76, both hemispheres 28.8
1873 Female, age 85, both hemispheres 20.0
2082 Female, age 91, right hemisphere 15.2
2527 Male, age 74, both hemispheres 14.0
Hippocampus, CA2
nTPM: 16.0
1940 Female, age 85, left hemisphere 24.6
2249 Male, age 74, both hemispheres 22.8
1892 Male, age 76, both hemispheres 17.9
1963 Male, age 80, left hemisphere 15.1
2437 Female, age 94, left hemisphere 8.0
2113 Female, age 91, right hemisphere 7.3
Hippocampus, CA3
nTPM: 24.3
2620 Female, age 94, left hemisphere 50.3
2137 Male, age 80, left hemisphere 28.2
2861 Female, age 67, both hemispheres 25.3
1867 Male, age 76, both hemispheres 25.1
1891 Female, age 85, both hemispheres 11.2
2436 Male, age 74, both hemispheres 5.7
Parahippocampal cortex
nTPM: 14.7
2622 Female, age 67, right hemisphere 31.1
2018 Male, age 76, both hemispheres 25.1
1990 Female, age 91, right hemisphere 16.1
1933 Female, age 85, both hemispheres 14.4
2532 Female, age 72, left hemisphere 12.9
2245 Female, age 91, both hemispheres 12.0
2693 Female, age 94, both hemispheres 11.7
1850 Male, age 80, both hemispheres 9.9
2692 Male, age 74, both hemispheres 9.7
2250 Female, age 67, right hemisphere 4.1
Perirhinal gyrus
nTPM: 10.9
2521 Female, age 94, right hemisphere 13.9
1794 Male, age 80, right hemisphere 13.0
1847 Female, age 91, left hemisphere 11.4
2848 Male, age 76, right hemisphere 9.8
1841 Female, age 85, right hemisphere 6.3
Subiculum
nTPM: 16.4
1901 Male, age 80, both hemispheres 28.5
2729 Female, age 91, right hemisphere 18.4
1977 Female, age 85, both hemispheres 16.7
2619 Male, age 74, both hemispheres 15.7
2042 Male, age 76, both hemispheres 14.9
2438 Female, age 94, left hemisphere 4.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 132.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 132.8
Samples: 197

Max nTPM: 311.3
Min nTPM: 34.9
Std nTPM: 48.2
Median nTPM: 127.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 311.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 297.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 252.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 245.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 243.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 240.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 234.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 233.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 227.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 219.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 215.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 81.3
FF:10153-102I9 76 years, female 85.3
FF:10169-103B7 60 years, female 77.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 28.4
Samples: 4

Max nTPM: 35.1
Min nTPM: 22.8
Sample A Female 35.1
Sample B Female 28.4
Sample C Male 27.2
Sample D Male 22.8
Entorhinal cortex
nTPM: 30.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 28.0
Sample A Female 32.6
Sample B Female 30.8
Sample C Male 29.2
Sample D Male 28.0
Subiculum
nTPM: 28.3
Samples: 4

Max nTPM: 38.5
Min nTPM: 22.2
Sample A Female 38.5
Sample B Female 25.3
Sample C Male 27.0
Sample D Male 22.2
Ventral hippocampus
nTPM: 29.6
Samples: 4

Max nTPM: 37.5
Min nTPM: 20.3
Sample A Female 31.3
Sample B Female 20.3
Sample C Male 37.5
Sample D Male 29.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.8
Samples: 4

Max nTPM: 50.9
Min nTPM: 41.3
Sample A Male 50.9
Sample B Male 50.0
Sample C Female 41.3
Sample D Female 49.1
Hippocampal formation
nTPM: 52.0
Samples: 4

Max nTPM: 55.3
Min nTPM: 45.8
Sample A Male 45.8
Sample B Male 54.0
Sample C Female 52.9
Sample D Female 55.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
74658111 Antisense, RP_060220_02_C07, Mouse strain C57BL/6J (56 days, male) 12.9
671251 Antisense, RP_040914_02_B10, Mouse strain C57BL/6J (56 days, male) 8.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.