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PTBP3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA:9.6 nTPM
GTEx:4.9 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:13.1 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.1
2846 Female, age 79, unknown 15.3
2290 Female, age 72, unknown 11.3
1854 Male, age 80, left hemisphere 10.7
1857 Female, age 85, left hemisphere 10.5
2289 Male, age 61, right hemisphere 8.1
1781 Male, age 74, unknown 7.0
2288 Male, age 75, left hemisphere 5.2
2481 Female, age 94, left hemisphere 4.7
Claustrum
nTPM: 6.6
2196 Female, age 79, unknown 9.4
2568 Male, age 61, both hemispheres 8.9
2392 Female, age 94, both hemispheres 7.2
2198 Male, age 80, both hemispheres 6.8
1956 Male, age 74, unknown 6.2
2645 Female, age 72, unknown 6.2
2292 Female, age 85, both hemispheres 6.1
2284 Female, age 91, both hemispheres 5.9
2491 Male, age 75, both hemispheres 3.0
Globus pallidus, externus
nTPM: 2.4
2395 Male, age 75, both hemispheres 4.7
2772 Female, age 79, unknown 3.7
1996 Male, age 80, right hemisphere 3.3
2646 Male, age 61, right hemisphere 0.3
2567 Female, age 72, unknown 0.2
Globus pallidus, internus
nTPM: 2.6
2483 Female, age 94, right hemisphere 3.7
2037 Male, age 80, right hemisphere 3.5
2778 Female, age 91, both hemispheres 3.2
2287 Male, age 75, right hemisphere 2.9
1818 Male, age 74, unknown 2.6
2111 Female, age 85, right hemisphere 2.0
2566 Female, age 72, unknown 0.5
Nucleus accumbens
nTPM: 8.2
1856 Female, age 91, right hemisphere 15.2
1783 Male, age 74, unknown 10.2
1806 Female, age 85, left hemisphere 8.9
2824 Male, age 61, right hemisphere 8.8
2698 Female, age 72, unknown 8.6
2732 Male, age 80, right hemisphere 5.3
2286 Male, age 75, left hemisphere 4.7
2391 Female, age 94, left hemisphere 4.0
Nucleus basalis of Meynert
nTPM: 6.3
2393 Male, age 80, right hemisphere 9.8
2484 Female, age 94, left hemisphere 7.9
2821 Male, age 75, both hemispheres 6.8
2569 Male, age 61, both hemispheres 0.8
Nucleus of the diagonal band
nTPM: 4.6
1979 Male, age 74, unknown 6.5
1812 Female, age 91, both hemispheres 5.1
2029 Male, age 61, right hemisphere 4.4
2195 Female, age 85, both hemispheres 3.9
2775 Male, age 80, right hemisphere 3.3
Olfactory tubercle
nTPM: 4.7
1998 Female, age 91, both hemispheres 5.2
1846 Male, age 80, right hemisphere 4.9
2856 Male, age 75, right hemisphere 4.5
2487 Female, age 94, left hemisphere 4.3
Putamen
nTPM: 9.6
2466 Female, age 79, unknown 14.5
1838 Male, age 80, right hemisphere 12.2
1829 Male, age 74, unknown 10.8
1937 Female, age 91, right hemisphere 9.8
2489 Female, age 72, unknown 9.4
2482 Female, age 94, left hemisphere 6.4
2647 Male, age 75, left hemisphere 4.0
Septal nuclei
nTPM: 3.6
2031 Female, age 72, unknown 6.7
2629 Female, age 94, right hemisphere 4.1
1960 Male, age 74, unknown 3.4
2009 Female, age 91, both hemispheres 3.0
2394 Male, age 61, left hemisphere 3.0
2199 Male, age 80, right hemisphere 2.5
2059 Female, age 85, both hemispheres 2.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.5
Samples: 246

Max nTPM: 15.3
Min nTPM: 2.6
Std nTPM: 1.2
Median nTPM: 4.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 15.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 8.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 7.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 6.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 6.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 6.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 6.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 6.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 6.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 6.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 6.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.9
Samples: 246

Max nTPM: 9.2
Min nTPM: 2.2
Std nTPM: 1.1
Median nTPM: 4.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 9.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 8.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 7.4
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 7.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 7.3
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 7.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 7.1
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 7.1
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 6.9
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 6.8
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 6.7
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Brain - Putamen (basal ganglia)
Average nTPM: 3.9
Samples: 205

Max nTPM: 9.1
Min nTPM: 1.5
Std nTPM: 1.0
Median nTPM: 3.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 9.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 8.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 7.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 6.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 6.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 6.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 6.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 6.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 6.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 6.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 5.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.3
FF:10164-103B2 76 years, female 47.3
Globus pallidus
Scaled Tags Per Million: 42.7
FF:10175-103C4 60 years, female 51.3
FF:10161-103A8 76 years, female 34.1
Nucleus accumbens
Scaled Tags Per Million: 38.7
FF:10037-101F1 23-56 years, mixed 38.7
Putamen
Scaled Tags Per Million: 36.4
FF:10176-103C5 60 years, female 36.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Caudate
nTPM: 22.2
Samples: 4

Max nTPM: 23.6
Min nTPM: 21.3
Sample A Female 23.6
Sample B Female 21.5
Sample C Male 21.3
Sample D Male 22.4
Putamen
nTPM: 24.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 22.0
Sample C Male 31.4
Sample D Male 23.6
Septum
nTPM: 20.3
Samples: 4

Max nTPM: 23.5
Min nTPM: 16.3
Sample A Female 23.5
Sample B Female 19.5
Sample C Male 21.8
Sample D Male 16.3
Ventral pallidum
nTPM: 19.1
Samples: 4

Max nTPM: 24.5
Min nTPM: 14.1
Sample A Female 24.5
Sample B Female 18.7
Sample C Male 14.1
Sample D Male 18.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.1
Samples: 4

Max nTPM: 13.8
Min nTPM: 12.4
Sample A Male 13.3
Sample B Male 13.0
Sample C Female 12.4
Sample D Female 13.8
Septum
nTPM: 8.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 8.6
Sample A Male 8.6
Sample B Male 8.9
Sample C Female 8.6
Sample D Female 9.4
Ventral forebrain
nTPM: 9.9
Samples: 4

Max nTPM: 10.0
Min nTPM: 9.8
Sample A Male 10.0
Sample B Male 9.8
Sample C Female 9.8
Sample D Female 9.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
73424196 Antisense, RP_051019_03_D02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
73424196 Antisense, RP_051019_03_D02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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