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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:126.1 nTPM
HPA:126.1 nTPM
GTEx:147.6 nTPM
FANTOM5:349.6 Scaled Tags Per Million
Mouse:60.7 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.3
2666 Male, age 74, left hemisphere 129.8
2586 Male, age 75, left hemisphere 126.7
1870 Female, age 42, unknown 122.4
1830 Male, age 51, unknown 120.7
2411 Female, age 72, unknown 119.0
1833 Male, age 53, unknown 117.0
2019 Male, age 18, unknown 117.0
1827 Male, age 72, unknown 113.1
2219 Male, age 76, both hemispheres 109.3
2828 Female, age 72, unknown 108.1
Dorsal raphe nucleus
nTPM: 109.2
2750 Male, age 76, both hemispheres 113.4
2016 Female, age 72, unknown 112.8
1828 Male, age 53, unknown 110.7
2298 Female, age 72, unknown 109.0
2047 Male, age 72, unknown 100.3
Inferior colliculus
nTPM: 108.0
1848 Female, age 42, unknown 110.0
2097 Female, age 72, unknown 109.6
1890 Male, age 53, unknown 108.4
2849 Male, age 72, unknown 103.9
Median raphe nucleus
nTPM: 111.2
2220 Male, age 76, midline 111.2
Pedunculopontine tegmental nucleus
nTPM: 114.6
2334 Male, age 80, both hemispheres 119.9
2338 Male, age 61, both hemispheres 118.7
1921 Female, age 85, both hemispheres 105.2
Periaquaductal grey, anterior
nTPM: 113.1
2502 Female, age 75, unknown 122.0
1947 Male, age 18, unknown 112.0
1795 Male, age 51, unknown 105.3
Periaquaductal grey, dorsal
nTPM: 109.8
2464 Female, age 72, unknown 118.3
1831 Male, age 72, unknown 108.8
2850 Male, age 76, both hemispheres 107.4
1840 Male, age 53, unknown 104.6
Periaquaductal grey, lateral
nTPM: 106.7
2053 Male, age 18, unknown 109.3
2272 Male, age 74, both hemispheres 107.0
2140 Male, age 76, both hemispheres 103.8
Pretectal area
nTPM: 111.2
1815 Male, age 53, unknown 119.4
1816 Male, age 51, unknown 117.4
2316 Male, age 76, right hemisphere 116.4
1817 Female, age 42, unknown 115.9
2825 Male, age 18, unknown 113.7
2007 Male, age 72, unknown 113.1
2224 Female, age 72, unknown 112.1
2273 Male, age 74, both hemispheres 108.7
1944 Female, age 72, unknown 107.2
2407 Male, age 75, both hemispheres 103.2
2667 Female, age 75, unknown 96.0
Red nucleus
nTPM: 126.1
2503 Female, age 72, unknown 147.2
2725 Female, age 75, unknown 134.6
2588 Male, age 74, left hemisphere 130.3
1904 Male, age 53, unknown 127.3
1954 Female, age 42, unknown 127.2
2227 Male, age 72, unknown 126.9
1821 Female, age 72, unknown 124.7
1865 Male, age 51, unknown 124.3
2769 Male, age 72, unknown 120.2
2823 Male, age 76, right hemisphere 118.6
2785 Male, age 18, unknown 118.3
2584 Male, age 75, left hemisphere 113.2
Substantia nigra
nTPM: 112.2
2241 Male, age 72, unknown 126.5
2590 Female, age 75, unknown 114.3
2665 Male, age 74, both hemispheres 113.5
1851 Male, age 51, unknown 112.5
2699 Male, age 18, unknown 111.9
2409 Female, age 72, unknown 110.5
1889 Female, age 72, unknown 109.9
1941 Male, age 53, unknown 109.9
2583 Male, age 75, right hemisphere 108.2
1916 Female, age 42, unknown 105.1
Superior colliculus
nTPM: 114.2
1995 Male, age 72, unknown 122.9
1913 Female, age 42, unknown 121.4
2587 Male, age 74, left hemisphere 116.9
2261 Male, age 18, unknown 116.7
2668 Female, age 75, unknown 113.4
1839 Male, age 51, unknown 113.2
1796 Male, age 53, unknown 111.1
2664 Male, age 75, both hemispheres 109.2
2087 Female, age 72, unknown 108.8
1895 Male, age 76, right hemisphere 108.7
Ventral tegmental area
nTPM: 113.7
2223 Female, age 72, unknown 124.2
1942 Male, age 51, unknown 114.0
2021 Male, age 53, unknown 113.1
2218 Male, age 76, both hemispheres 111.7
1915 Female, age 42, unknown 111.1
2410 Female, age 72, unknown 107.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 147.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 147.6
Samples: 139

Max nTPM: 277.5
Min nTPM: 80.7
Std nTPM: 40.3
Median nTPM: 141.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 277.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 253.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 253.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 245.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 237.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 234.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 232.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 226.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 217.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 215.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 204.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 349.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 349.6
FF:10158-103A5 76 years, female 349.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.7
Samples: 4

Max nTPM: 62.9
Min nTPM: 59.7
Sample A Male 60.1
Sample B Male 59.7
Sample C Female 62.9
Sample D Female 60.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
68301831 Antisense, RP_041130_01_H07, Mouse strain C57BL/6J (56 days, male) 8.1

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