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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:11.3 nTPM
HPA:11.3 nTPM
GTEx:21.4 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:0.3 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA077485
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.0
1857 Female, age 85, left hemisphere 17.1
2290 Female, age 72, unknown 14.9
1854 Male, age 80, left hemisphere 14.8
2846 Female, age 79, unknown 11.5
1781 Male, age 74, unknown 9.3
2289 Male, age 61, right hemisphere 9.3
2481 Female, age 94, left hemisphere 5.7
2288 Male, age 75, left hemisphere 5.3
Claustrum
nTPM: 3.8
2196 Female, age 79, unknown 6.4
2568 Male, age 61, both hemispheres 4.2
2198 Male, age 80, both hemispheres 4.0
2284 Female, age 91, both hemispheres 4.0
2645 Female, age 72, unknown 4.0
2292 Female, age 85, both hemispheres 3.4
2392 Female, age 94, both hemispheres 3.3
2491 Male, age 75, both hemispheres 2.7
1956 Male, age 74, unknown 2.4
Globus pallidus, externus
nTPM: 2.1
2646 Male, age 61, right hemisphere 2.4
2395 Male, age 75, both hemispheres 2.3
2567 Female, age 72, unknown 2.2
2772 Female, age 79, unknown 1.8
1996 Male, age 80, right hemisphere 1.6
Globus pallidus, internus
nTPM: 2.1
2483 Female, age 94, right hemisphere 5.0
2287 Male, age 75, right hemisphere 2.4
1818 Male, age 74, unknown 2.0
2566 Female, age 72, unknown 1.8
2037 Male, age 80, right hemisphere 1.5
2111 Female, age 85, right hemisphere 1.1
2778 Female, age 91, both hemispheres 0.9
Nucleus accumbens
nTPM: 11.2
1856 Female, age 91, right hemisphere 18.7
1806 Female, age 85, left hemisphere 16.4
1783 Male, age 74, unknown 15.6
2824 Male, age 61, right hemisphere 13.3
2698 Female, age 72, unknown 10.8
2286 Male, age 75, left hemisphere 6.1
2391 Female, age 94, left hemisphere 4.9
2732 Male, age 80, right hemisphere 3.9
Nucleus basalis of Meynert
nTPM: 6.1
2393 Male, age 80, right hemisphere 9.9
2484 Female, age 94, left hemisphere 7.0
2821 Male, age 75, both hemispheres 4.1
2569 Male, age 61, both hemispheres 3.6
Nucleus of the diagonal band
nTPM: 3.1
2775 Male, age 80, right hemisphere 4.0
2195 Female, age 85, both hemispheres 3.9
1812 Female, age 91, both hemispheres 3.3
2029 Male, age 61, right hemisphere 2.4
1979 Male, age 74, unknown 2.1
Olfactory tubercle
nTPM: 3.2
1998 Female, age 91, both hemispheres 3.9
1846 Male, age 80, right hemisphere 3.5
2487 Female, age 94, left hemisphere 2.6
2856 Male, age 75, right hemisphere 2.6
Putamen
nTPM: 11.3
1838 Male, age 80, right hemisphere 18.5
1937 Female, age 91, right hemisphere 13.9
2466 Female, age 79, unknown 12.1
1829 Male, age 74, unknown 11.1
2489 Female, age 72, unknown 11.0
2482 Female, age 94, left hemisphere 6.9
2647 Male, age 75, left hemisphere 5.5
Septal nuclei
nTPM: 2.5
2059 Female, age 85, both hemispheres 3.5
2009 Female, age 91, both hemispheres 2.8
2394 Male, age 61, left hemisphere 2.5
2629 Female, age 94, right hemisphere 2.5
1960 Male, age 74, unknown 2.4
2031 Female, age 72, unknown 2.0
2199 Male, age 80, right hemisphere 1.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.3
Samples: 246

Max nTPM: 48.4
Min nTPM: 1.8
Std nTPM: 9.6
Median nTPM: 15.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 48.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 42.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 41.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 41.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 41.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 39.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 39.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 38.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 38.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 35.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 35.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 47.7
Min nTPM: 0.6
Std nTPM: 10.7
Median nTPM: 22.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 46.1
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 44.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 41.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 41.3
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 41.0
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 40.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 40.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 39.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 39.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 39.4
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Brain - Putamen (basal ganglia)
Average nTPM: 15.6
Samples: 205

Max nTPM: 40.3
Min nTPM: 2.4
Std nTPM: 9.3
Median nTPM: 13.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 40.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 38.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 38.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 38.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 38.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 38.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 37.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 36.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 35.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 33.9
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 32.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.8
FF:10164-103B2 76 years, female 32.8
Globus pallidus
Scaled Tags Per Million: 6.5
FF:10175-103C4 60 years, female 10.2
FF:10161-103A8 76 years, female 2.8
Nucleus accumbens
Scaled Tags Per Million: 20.3
FF:10037-101F1 23-56 years, mixed 20.3
Putamen
Scaled Tags Per Million: 49.5
FF:10176-103C5 60 years, female 49.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.7
Sample D Male 0.6
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.4
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.1
Ventral pallidum
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.5
Sample B Male 0.3
Sample C Female 0.3
Sample D Female 0.2
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.3
Sample D Female 0.2
Ventral forebrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.4
Sample C Female 0.2
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
632488 Antisense, RP_040907_01_D06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
632488 Antisense, RP_040907_01_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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