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BBOF1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA:9.8 nTPM
GTEx:11.3 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:3.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.0
1833 Male, age 53, unknown 6.0
2219 Male, age 76, both hemispheres 5.7
1827 Male, age 72, unknown 5.4
2019 Male, age 18, unknown 5.3
1870 Female, age 42, unknown 4.9
2666 Male, age 74, left hemisphere 4.8
1830 Male, age 51, unknown 4.7
2828 Female, age 72, unknown 4.7
2586 Male, age 75, left hemisphere 4.4
2411 Female, age 72, unknown 4.2
Dorsal raphe nucleus
nTPM: 6.5
2298 Female, age 72, unknown 8.6
2016 Female, age 72, unknown 7.5
1828 Male, age 53, unknown 6.5
2047 Male, age 72, unknown 5.2
2750 Male, age 76, both hemispheres 4.7
Inferior colliculus
nTPM: 5.9
2849 Male, age 72, unknown 6.8
1890 Male, age 53, unknown 5.8
2097 Female, age 72, unknown 5.6
1848 Female, age 42, unknown 5.3
Median raphe nucleus
nTPM: 5.6
2220 Male, age 76, midline 5.6
Pedunculopontine tegmental nucleus
nTPM: 5.6
2334 Male, age 80, both hemispheres 6.1
2338 Male, age 61, both hemispheres 5.5
1921 Female, age 85, both hemispheres 5.4
Periaquaductal grey, anterior
nTPM: 6.4
1795 Male, age 51, unknown 6.9
1947 Male, age 18, unknown 6.4
2502 Female, age 75, unknown 6.0
Periaquaductal grey, dorsal
nTPM: 8.2
2850 Male, age 76, both hemispheres 13.2
1840 Male, age 53, unknown 7.3
1831 Male, age 72, unknown 6.7
2464 Female, age 72, unknown 5.5
Periaquaductal grey, lateral
nTPM: 9.8
2272 Male, age 74, both hemispheres 13.0
2140 Male, age 76, both hemispheres 10.5
2053 Male, age 18, unknown 5.8
Pretectal area
nTPM: 6.1
2273 Male, age 74, both hemispheres 11.8
2224 Female, age 72, unknown 6.9
2825 Male, age 18, unknown 6.1
1816 Male, age 51, unknown 5.9
1944 Female, age 72, unknown 5.7
1815 Male, age 53, unknown 5.5
2667 Female, age 75, unknown 5.5
1817 Female, age 42, unknown 5.1
2007 Male, age 72, unknown 5.1
2316 Male, age 76, right hemisphere 5.0
2407 Male, age 75, both hemispheres 4.6
Red nucleus
nTPM: 5.5
2725 Female, age 75, unknown 7.3
1821 Female, age 72, unknown 6.1
1865 Male, age 51, unknown 5.7
2227 Male, age 72, unknown 5.7
2503 Female, age 72, unknown 5.7
1954 Female, age 42, unknown 5.6
1904 Male, age 53, unknown 5.3
2769 Male, age 72, unknown 5.3
2588 Male, age 74, left hemisphere 5.2
2823 Male, age 76, right hemisphere 5.0
2785 Male, age 18, unknown 4.9
2584 Male, age 75, left hemisphere 4.8
Substantia nigra
nTPM: 5.5
2699 Male, age 18, unknown 7.2
2241 Male, age 72, unknown 6.1
2409 Female, age 72, unknown 5.8
1941 Male, age 53, unknown 5.7
1851 Male, age 51, unknown 5.4
1916 Female, age 42, unknown 5.4
2590 Female, age 75, unknown 5.3
1889 Female, age 72, unknown 4.8
2583 Male, age 75, right hemisphere 4.8
2665 Male, age 74, both hemispheres 4.5
Superior colliculus
nTPM: 5.5
2261 Male, age 18, unknown 6.7
2587 Male, age 74, left hemisphere 6.5
1995 Male, age 72, unknown 6.0
1895 Male, age 76, right hemisphere 5.7
1913 Female, age 42, unknown 5.5
2664 Male, age 75, both hemispheres 5.2
1796 Male, age 53, unknown 5.0
2668 Female, age 75, unknown 4.9
1839 Male, age 51, unknown 4.8
2087 Female, age 72, unknown 4.8
Ventral tegmental area
nTPM: 5.4
1915 Female, age 42, unknown 5.8
1942 Male, age 51, unknown 5.8
2218 Male, age 76, both hemispheres 5.8
2021 Male, age 53, unknown 5.3
2223 Female, age 72, unknown 5.3
2410 Female, age 72, unknown 4.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.3
Samples: 139

Max nTPM: 24.6
Min nTPM: 3.6
Std nTPM: 3.4
Median nTPM: 11.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 24.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 21.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 21.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 17.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 17.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 16.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 16.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 16.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 15.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.7
FF:10158-103A5 76 years, female 8.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.5
Sample A Female 0.7
Sample B Female 1.0
Sample C Male 0.5
Sample D Male 0.6
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 3.3
Min nTPM: 2.4
Sample B Female 2.4
Sample C Male 2.9
Sample D Male 3.3
Substantia nigra
nTPM: 0.6
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.7
Sample C Male 0.5
Sample D Male 1.0
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.5
Min nTPM: 1.8
Sample A Male 2.6
Sample B Male 4.5
Sample C Female 3.6
Sample D Female 1.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
73497765 Antisense, RP_051121_01_F04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.