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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA:20.6 nTPM
GTEx:20.1 nTPM
FANTOM5:43.8 Scaled Tags Per Million
Pig:5.5 nTPM
Mouse:8.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.2
1870 Female, age 42, unknown 21.5
2411 Female, age 72, unknown 20.9
1833 Male, age 53, unknown 20.1
1830 Male, age 51, unknown 19.6
1827 Male, age 72, unknown 19.3
2828 Female, age 72, unknown 19.0
2019 Male, age 18, unknown 18.6
2219 Male, age 76, both hemispheres 18.1
2666 Male, age 74, left hemisphere 17.9
2586 Male, age 75, left hemisphere 17.4
Dorsal raphe nucleus
nTPM: 18.4
2750 Male, age 76, both hemispheres 19.4
2016 Female, age 72, unknown 18.8
1828 Male, age 53, unknown 18.7
2298 Female, age 72, unknown 17.7
2047 Male, age 72, unknown 17.2
Inferior colliculus
nTPM: 18.4
1848 Female, age 42, unknown 18.8
1890 Male, age 53, unknown 18.7
2849 Male, age 72, unknown 18.5
2097 Female, age 72, unknown 17.7
Median raphe nucleus
nTPM: 17.7
2220 Male, age 76, midline 17.7
Pedunculopontine tegmental nucleus
nTPM: 18.6
2334 Male, age 80, both hemispheres 19.6
1921 Female, age 85, both hemispheres 18.8
2338 Male, age 61, both hemispheres 17.4
Periaquaductal grey, anterior
nTPM: 17.9
1947 Male, age 18, unknown 18.0
2502 Female, age 75, unknown 17.9
1795 Male, age 51, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 18.7
2850 Male, age 76, both hemispheres 19.6
2464 Female, age 72, unknown 18.9
1831 Male, age 72, unknown 18.6
1840 Male, age 53, unknown 17.8
Periaquaductal grey, lateral
nTPM: 18.8
2272 Male, age 74, both hemispheres 18.9
2140 Male, age 76, both hemispheres 18.7
2053 Male, age 18, unknown 18.6
Pretectal area
nTPM: 18.4
1817 Female, age 42, unknown 19.0
2316 Male, age 76, right hemisphere 19.0
2825 Male, age 18, unknown 19.0
2273 Male, age 74, both hemispheres 18.9
1815 Male, age 53, unknown 18.7
1816 Male, age 51, unknown 18.5
2407 Male, age 75, both hemispheres 18.5
2007 Male, age 72, unknown 18.2
2224 Female, age 72, unknown 18.2
2667 Female, age 75, unknown 18.0
1944 Female, age 72, unknown 16.4
Red nucleus
nTPM: 20.6
2823 Male, age 76, right hemisphere 22.2
1821 Female, age 72, unknown 21.4
2725 Female, age 75, unknown 21.4
1904 Male, age 53, unknown 21.1
1865 Male, age 51, unknown 21.0
2503 Female, age 72, unknown 20.8
2769 Male, age 72, unknown 20.5
1954 Female, age 42, unknown 20.4
2227 Male, age 72, unknown 20.0
2588 Male, age 74, left hemisphere 19.8
2785 Male, age 18, unknown 19.7
2584 Male, age 75, left hemisphere 19.1
Substantia nigra
nTPM: 19.1
2699 Male, age 18, unknown 20.3
2409 Female, age 72, unknown 19.9
2590 Female, age 75, unknown 19.7
2241 Male, age 72, unknown 19.6
1851 Male, age 51, unknown 19.1
1916 Female, age 42, unknown 18.7
2583 Male, age 75, right hemisphere 18.7
1889 Female, age 72, unknown 18.4
1941 Male, age 53, unknown 18.4
2665 Male, age 74, both hemispheres 18.4
Superior colliculus
nTPM: 18.4
2587 Male, age 74, left hemisphere 20.2
1913 Female, age 42, unknown 20.1
1995 Male, age 72, unknown 19.6
1839 Male, age 51, unknown 18.4
1895 Male, age 76, right hemisphere 18.1
1796 Male, age 53, unknown 17.9
2261 Male, age 18, unknown 17.8
2087 Female, age 72, unknown 17.7
2668 Female, age 75, unknown 17.4
2664 Male, age 75, both hemispheres 16.3
Ventral tegmental area
nTPM: 19.3
2410 Female, age 72, unknown 20.8
2223 Female, age 72, unknown 19.8
2218 Male, age 76, both hemispheres 19.3
2021 Male, age 53, unknown 19.0
1915 Female, age 42, unknown 18.7
1942 Male, age 51, unknown 18.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.1
Samples: 139

Max nTPM: 41.6
Min nTPM: 11.9
Std nTPM: 4.8
Median nTPM: 19.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 32.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 31.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 30.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 28.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.8
FF:10158-103A5 76 years, female 43.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.5
Pig sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.3
Sample A Female 5.7
Sample B Female 5.4
Sample C Male 4.8
Sample D Male 4.3
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 5.6
Min nTPM: 5.4
Sample B Female 5.6
Sample C Male 5.4
Sample D Male 5.4
Substantia nigra
nTPM: 4.8
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.2
Sample A Female 5.4
Sample B Female 4.9
Sample C Male 4.7
Sample D Male 4.2
Superior colliculi
nTPM: 5.1
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.3
Sample A Female 5.6
Sample B Female 5.9
Sample C Male 4.4
Sample D Male 4.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 7.5
Sample A Male 8.8
Sample B Male 8.6
Sample C Female 7.5
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75695647 Antisense, RP_060518_04_B10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas project is funded
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