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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.7 nTPM
HPA:22.7 nTPM
GTEx:8.6 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:26.5 nTPM
Mouse:5.5 nTPM
Allen mouse:2.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA025736Antibody HPA025765Antibody HPA025811Antibody CAB021106
Glial cells LowLowLowMedium
Neuronal cells MediumMediumMediumMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.7
Sample id Sample description nTPM
Hippocampus
nTPM: 21.3
1898 Male, age 80, left hemisphere 25.5
2621 Female, age 67, right hemisphere 21.1
1855 Male, age 76, left hemisphere 20.8
2529 Female, age 94, left hemisphere 20.4
2148 Female, age 91, left hemisphere 20.0
1911 Female, age 85, right hemisphere 19.8
Dentate gyrus
nTPM: 22.1
2530 Female, age 94, left hemisphere 25.2
2010 Male, age 76, both hemispheres 24.9
2528 Male, age 74, both hemispheres 21.9
1927 Female, age 91, both hemispheres 21.6
2246 Female, age 85, both hemispheres 20.7
2531 Female, age 67, both hemispheres 18.4
Entorhinal gyrus
nTPM: 20.8
1938 Female, age 85, left hemisphere 21.9
2764 Male, age 80, right hemisphere 21.5
2117 Female, age 91, right hemisphere 21.0
2686 Male, age 75, right hemisphere 20.5
2613 Female, age 94, left hemisphere 20.4
1787 Male, age 76, left hemisphere 19.6
Hippocampus, CA1
nTPM: 22.7
2749 Male, age 80, left hemisphere 26.8
1873 Female, age 85, both hemispheres 25.5
2045 Male, age 76, both hemispheres 20.9
2527 Male, age 74, both hemispheres 20.9
2082 Female, age 91, right hemisphere 19.5
Hippocampus, CA2
nTPM: 22.4
1963 Male, age 80, left hemisphere 26.5
1892 Male, age 76, both hemispheres 23.9
2249 Male, age 74, both hemispheres 23.1
2437 Female, age 94, left hemisphere 21.5
1940 Female, age 85, left hemisphere 20.1
2113 Female, age 91, right hemisphere 19.7
Hippocampus, CA3
nTPM: 20.2
1891 Female, age 85, both hemispheres 21.6
2436 Male, age 74, both hemispheres 21.1
1867 Male, age 76, both hemispheres 20.9
2137 Male, age 80, left hemisphere 20.2
2620 Female, age 94, left hemisphere 18.6
2861 Female, age 67, both hemispheres 18.6
Parahippocampal cortex
nTPM: 21.0
1933 Female, age 85, both hemispheres 23.6
1850 Male, age 80, both hemispheres 23.2
2532 Female, age 72, left hemisphere 21.7
2250 Female, age 67, right hemisphere 21.3
1990 Female, age 91, right hemisphere 21.2
2693 Female, age 94, both hemispheres 20.7
2622 Female, age 67, right hemisphere 20.6
2692 Male, age 74, both hemispheres 19.7
2245 Female, age 91, both hemispheres 19.0
2018 Male, age 76, both hemispheres 18.9
Perirhinal gyrus
nTPM: 21.7
1841 Female, age 85, right hemisphere 23.1
1847 Female, age 91, left hemisphere 22.2
1794 Male, age 80, right hemisphere 21.8
2521 Female, age 94, right hemisphere 21.6
2848 Male, age 76, right hemisphere 20.0
Subiculum
nTPM: 20.1
1977 Female, age 85, both hemispheres 22.3
2619 Male, age 74, both hemispheres 20.0
1901 Male, age 80, both hemispheres 19.9
2438 Female, age 94, left hemisphere 19.6
2729 Female, age 91, right hemisphere 19.6
2042 Male, age 76, both hemispheres 19.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.6
Samples: 197

Max nTPM: 25.2
Min nTPM: 2.3
Std nTPM: 3.8
Median nTPM: 8.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 25.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 24.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 22.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 22.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 20.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 18.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 17.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 16.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 16.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 15.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 14.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.0
FF:10169-103B7 60 years, female 34.5
FF:10153-102I9 76 years, female 19.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.5
Samples: 4

Max nTPM: 37.3
Min nTPM: 21.2
Sample A Female 37.3
Sample B Female 26.0
Sample C Male 21.2
Sample D Male 21.5
Entorhinal cortex
nTPM: 22.1
Samples: 4

Max nTPM: 24.6
Min nTPM: 20.6
Sample A Female 24.6
Sample B Female 21.9
Sample C Male 20.6
Sample D Male 21.2
Subiculum
nTPM: 24.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 22.0
Sample A Female 27.4
Sample B Female 22.8
Sample C Male 22.0
Sample D Male 25.6
Ventral hippocampus
nTPM: 24.8
Samples: 4

Max nTPM: 28.7
Min nTPM: 17.9
Sample A Female 25.7
Sample B Female 17.9
Sample C Male 27.0
Sample D Male 28.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.0
Samples: 4

Max nTPM: 60.5
Min nTPM: 52.9
Sample A Male 52.9
Sample B Male 53.6
Sample C Female 53.0
Sample D Female 60.5
Hippocampal formation
nTPM: 46.1
Samples: 4

Max nTPM: 53.9
Min nTPM: 41.6
Sample A Male 53.9
Sample B Male 41.6
Sample C Female 45.3
Sample D Female 43.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.9
69262321 Antisense, RP_050303_02_A01, Mouse strain C57BL/6J (56 days, male) 5.4
77869798 Antisense, RP_070205_01_B06, Mouse strain C57BL/6J (56 days, male) 0.5
Hippocampal formation
Expression energy: 2.9
69262321 Antisense, RP_050303_02_A01, Mouse strain C57BL/6J (56 days, male) 5.4
77869798 Antisense, RP_070205_01_B06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.