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IQSEC3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA:9.8 nTPM
GTEx:22.8 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:1.3 nTPM
Mouse:5.9 nTPM
Allen mouse:4.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.8
Sample id Sample description nTPM
Hippocampus
nTPM: 9.8
2621 Female, age 67, right hemisphere 18.5
2148 Female, age 91, left hemisphere 12.0
2529 Female, age 94, left hemisphere 10.7
1898 Male, age 80, left hemisphere 9.6
1855 Male, age 76, left hemisphere 6.7
1911 Female, age 85, right hemisphere 1.3
Dentate gyrus
nTPM: 8.1
1927 Female, age 91, both hemispheres 15.7
2530 Female, age 94, left hemisphere 14.2
2531 Female, age 67, both hemispheres 12.6
2528 Male, age 74, both hemispheres 6.0
2246 Female, age 85, both hemispheres 0.3
2010 Male, age 76, both hemispheres 0.0
Entorhinal gyrus
nTPM: 8.2
2613 Female, age 94, left hemisphere 29.3
2686 Male, age 75, right hemisphere 12.0
2764 Male, age 80, right hemisphere 4.6
1938 Female, age 85, left hemisphere 2.0
1787 Male, age 76, left hemisphere 1.4
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 5.8
2749 Male, age 80, left hemisphere 12.0
2527 Male, age 74, both hemispheres 11.4
1873 Female, age 85, both hemispheres 5.5
2045 Male, age 76, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 9.5
1963 Male, age 80, left hemisphere 24.5
2437 Female, age 94, left hemisphere 22.0
1892 Male, age 76, both hemispheres 10.9
1940 Female, age 85, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 9.5
2861 Female, age 67, both hemispheres 32.1
2620 Female, age 94, left hemisphere 13.6
2137 Male, age 80, left hemisphere 10.0
1867 Male, age 76, both hemispheres 1.6
1891 Female, age 85, both hemispheres 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 5.1
2245 Female, age 91, both hemispheres 15.9
2622 Female, age 67, right hemisphere 13.5
2693 Female, age 94, both hemispheres 6.5
1990 Female, age 91, right hemisphere 6.3
2692 Male, age 74, both hemispheres 4.1
2250 Female, age 67, right hemisphere 3.6
1850 Male, age 80, both hemispheres 0.8
2532 Female, age 72, left hemisphere 0.8
1933 Female, age 85, both hemispheres 0.0
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 3.8
2521 Female, age 94, right hemisphere 7.9
1847 Female, age 91, left hemisphere 7.0
1794 Male, age 80, right hemisphere 4.3
1841 Female, age 85, right hemisphere 0.0
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 2.6
2438 Female, age 94, left hemisphere 10.2
2619 Male, age 74, both hemispheres 5.4
1901 Male, age 80, both hemispheres 0.0
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.8
Samples: 197

Max nTPM: 61.3
Min nTPM: 0.5
Std nTPM: 13.6
Median nTPM: 21.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 61.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 60.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 56.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 53.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 52.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 51.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 50.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 49.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 48.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 48.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 47.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 6.3
FF:10169-103B7 60 years, female 8.3
FF:10153-102I9 76 years, female 4.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.3
Sample C Male 0.7
Sample D Male 1.3
Entorhinal cortex
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.1
Sample A Female 1.4
Sample B Female 1.3
Sample C Male 1.1
Sample D Male 1.6
Subiculum
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.1
Sample C Male 1.2
Sample D Male 1.1
Ventral hippocampus
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.8
Sample A Female 1.2
Sample B Female 1.6
Sample C Male 0.8
Sample D Male 1.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.8
Samples: 4

Max nTPM: 7.5
Min nTPM: 3.7
Sample A Male 6.9
Sample B Male 7.5
Sample C Female 4.9
Sample D Female 3.7
Hippocampal formation
nTPM: 6.0
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.1
Sample A Male 6.8
Sample B Male 5.9
Sample C Female 4.1
Sample D Female 7.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.9
71495723 Antisense, RP_050913_03_E02, Mouse strain C57BL/6J (56 days, male) 4.9
73636153 Antisense, RP_050913_03_E02, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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