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HSPH1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:180.7 nTPM
HPA:180.7 nTPM
GTEx:89.6 nTPM
FANTOM5:293.5 Scaled Tags Per Million
Pig:103.6 nTPM
Mouse:119.2 nTPM
Allen mouse:15.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 180.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 174.7
2219 Male, age 76, both hemispheres 202.3
1827 Male, age 72, unknown 179.4
2666 Male, age 74, left hemisphere 175.8
2019 Male, age 18, unknown 173.8
2411 Female, age 72, unknown 173.1
1870 Female, age 42, unknown 172.3
2586 Male, age 75, left hemisphere 170.5
1833 Male, age 53, unknown 167.4
1830 Male, age 51, unknown 165.9
2828 Female, age 72, unknown 165.9
Dorsal raphe nucleus
nTPM: 169.5
2298 Female, age 72, unknown 180.3
2047 Male, age 72, unknown 171.7
1828 Male, age 53, unknown 166.4
2016 Female, age 72, unknown 165.2
2750 Male, age 76, both hemispheres 164.1
Inferior colliculus
nTPM: 169.7
2097 Female, age 72, unknown 177.2
1848 Female, age 42, unknown 169.4
2849 Male, age 72, unknown 166.6
1890 Male, age 53, unknown 165.6
Median raphe nucleus
nTPM: 170.7
2220 Male, age 76, midline 170.7
Pedunculopontine tegmental nucleus
nTPM: 170.3
2334 Male, age 80, both hemispheres 172.1
1921 Female, age 85, both hemispheres 171.3
2338 Male, age 61, both hemispheres 167.5
Periaquaductal grey, anterior
nTPM: 178.3
1947 Male, age 18, unknown 183.7
1795 Male, age 51, unknown 180.7
2502 Female, age 75, unknown 170.6
Periaquaductal grey, dorsal
nTPM: 170.9
1840 Male, age 53, unknown 174.7
1831 Male, age 72, unknown 170.8
2464 Female, age 72, unknown 169.8
2850 Male, age 76, both hemispheres 168.2
Periaquaductal grey, lateral
nTPM: 170.2
2272 Male, age 74, both hemispheres 173.0
2053 Male, age 18, unknown 170.5
2140 Male, age 76, both hemispheres 167.2
Pretectal area
nTPM: 180.7
1816 Male, age 51, unknown 203.7
1944 Female, age 72, unknown 196.4
1817 Female, age 42, unknown 190.0
2007 Male, age 72, unknown 187.3
1815 Male, age 53, unknown 182.8
2667 Female, age 75, unknown 176.9
2224 Female, age 72, unknown 175.7
2273 Male, age 74, both hemispheres 171.6
2407 Male, age 75, both hemispheres 170.6
2825 Male, age 18, unknown 170.3
2316 Male, age 76, right hemisphere 162.3
Red nucleus
nTPM: 164.9
2785 Male, age 18, unknown 172.6
2725 Female, age 75, unknown 171.7
2584 Male, age 75, left hemisphere 169.3
1821 Female, age 72, unknown 167.1
1954 Female, age 42, unknown 165.9
2588 Male, age 74, left hemisphere 164.5
1904 Male, age 53, unknown 163.8
2503 Female, age 72, unknown 163.0
1865 Male, age 51, unknown 161.4
2227 Male, age 72, unknown 161.2
2769 Male, age 72, unknown 160.4
2823 Male, age 76, right hemisphere 157.4
Substantia nigra
nTPM: 169.8
1889 Female, age 72, unknown 181.7
2241 Male, age 72, unknown 173.4
1941 Male, age 53, unknown 172.7
2583 Male, age 75, right hemisphere 172.7
2409 Female, age 72, unknown 169.1
1851 Male, age 51, unknown 168.2
2665 Male, age 74, both hemispheres 168.2
2590 Female, age 75, unknown 166.9
1916 Female, age 42, unknown 166.6
2699 Male, age 18, unknown 158.9
Superior colliculus
nTPM: 173.9
2087 Female, age 72, unknown 185.4
2261 Male, age 18, unknown 182.8
1796 Male, age 53, unknown 180.1
2668 Female, age 75, unknown 175.6
2587 Male, age 74, left hemisphere 170.0
1913 Female, age 42, unknown 169.8
1839 Male, age 51, unknown 169.6
1995 Male, age 72, unknown 168.7
2664 Male, age 75, both hemispheres 168.5
1895 Male, age 76, right hemisphere 168.3
Ventral tegmental area
nTPM: 165.7
2410 Female, age 72, unknown 169.3
1915 Female, age 42, unknown 167.7
2223 Female, age 72, unknown 165.8
1942 Male, age 51, unknown 165.7
2021 Male, age 53, unknown 164.1
2218 Male, age 76, both hemispheres 161.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.6
Samples: 139

Max nTPM: 1379.8
Min nTPM: 16.6
Std nTPM: 151.6
Median nTPM: 53.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1379.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 901.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 505.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 503.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 477.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 275.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 246.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 233.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 216.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 190.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 190.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 293.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 293.5
FF:10158-103A5 76 years, female 293.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 103.6
Pig sample Sample description nTPM
Midbrain
nTPM: 103.6
Samples: 4

Max nTPM: 237.1
Min nTPM: 40.9
Sample A Female 40.9
Sample B Female 57.3
Sample C Male 237.1
Sample D Male 78.9
Periaqueductal gray
nTPM: 68.0
Samples: 3

Max nTPM: 84.9
Min nTPM: 54.6
Sample B Female 54.6
Sample C Male 84.9
Sample D Male 64.5
Substantia nigra
nTPM: 62.8
Samples: 4

Max nTPM: 84.2
Min nTPM: 41.6
Sample A Female 84.2
Sample B Female 44.8
Sample C Male 80.5
Sample D Male 41.6
Superior colliculi
nTPM: 99.1
Samples: 4

Max nTPM: 168.1
Min nTPM: 65.1
Sample A Female 74.9
Sample B Female 65.1
Sample C Male 168.1
Sample D Male 88.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.3
Samples: 4

Max nTPM: 137.6
Min nTPM: 100.5
Sample A Male 100.5
Sample B Male 118.0
Sample C Female 137.6
Sample D Female 120.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
69735126 Antisense, RP_050503_02_B06, Mouse strain C57BL/6J (56 days, male) 15.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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