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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.0 nTPM
HPA:34.0 nTPM
GTEx:47.5 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:21.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
2586 Male, age 75, left hemisphere 37.0
1870 Female, age 42, unknown 34.3
2666 Male, age 74, left hemisphere 33.4
2828 Female, age 72, unknown 32.9
1830 Male, age 51, unknown 31.8
1833 Male, age 53, unknown 31.6
2411 Female, age 72, unknown 31.2
2019 Male, age 18, unknown 30.6
1827 Male, age 72, unknown 30.3
2219 Male, age 76, both hemispheres 30.0
Dorsal raphe nucleus
nTPM: 30.4
2016 Female, age 72, unknown 32.6
2750 Male, age 76, both hemispheres 31.8
2047 Male, age 72, unknown 30.4
1828 Male, age 53, unknown 30.2
2298 Female, age 72, unknown 27.2
Inferior colliculus
nTPM: 31.8
1890 Male, age 53, unknown 32.7
2849 Male, age 72, unknown 32.1
1848 Female, age 42, unknown 31.5
2097 Female, age 72, unknown 31.0
Median raphe nucleus
nTPM: 28.5
2220 Male, age 76, midline 28.5
Pedunculopontine tegmental nucleus
nTPM: 29.7
2334 Male, age 80, both hemispheres 30.4
1921 Female, age 85, both hemispheres 30.1
2338 Male, age 61, both hemispheres 28.7
Periaquaductal grey, anterior
nTPM: 32.9
2502 Female, age 75, unknown 35.1
1947 Male, age 18, unknown 33.1
1795 Male, age 51, unknown 30.4
Periaquaductal grey, dorsal
nTPM: 29.6
2464 Female, age 72, unknown 30.8
1840 Male, age 53, unknown 30.3
2850 Male, age 76, both hemispheres 29.1
1831 Male, age 72, unknown 28.4
Periaquaductal grey, lateral
nTPM: 29.2
2140 Male, age 76, both hemispheres 29.9
2053 Male, age 18, unknown 29.7
2272 Male, age 74, both hemispheres 28.1
Pretectal area
nTPM: 30.0
2007 Male, age 72, unknown 32.0
1815 Male, age 53, unknown 31.6
2407 Male, age 75, both hemispheres 30.9
2316 Male, age 76, right hemisphere 30.6
1817 Female, age 42, unknown 30.5
2825 Male, age 18, unknown 30.3
1816 Male, age 51, unknown 29.5
1944 Female, age 72, unknown 29.5
2224 Female, age 72, unknown 28.9
2273 Male, age 74, both hemispheres 28.3
2667 Female, age 75, unknown 27.7
Red nucleus
nTPM: 34.0
2588 Male, age 74, left hemisphere 38.9
2503 Female, age 72, unknown 37.1
2769 Male, age 72, unknown 34.7
2227 Male, age 72, unknown 34.3
1865 Male, age 51, unknown 34.2
1904 Male, age 53, unknown 34.0
2584 Male, age 75, left hemisphere 34.0
2785 Male, age 18, unknown 33.8
1954 Female, age 42, unknown 32.6
1821 Female, age 72, unknown 32.2
2725 Female, age 75, unknown 31.9
2823 Male, age 76, right hemisphere 30.2
Substantia nigra
nTPM: 31.3
2590 Female, age 75, unknown 33.1
2665 Male, age 74, both hemispheres 32.6
2583 Male, age 75, right hemisphere 31.8
2699 Male, age 18, unknown 31.8
1851 Male, age 51, unknown 31.6
2241 Male, age 72, unknown 31.3
1889 Female, age 72, unknown 30.9
2409 Female, age 72, unknown 30.4
1941 Male, age 53, unknown 30.1
1916 Female, age 42, unknown 29.0
Superior colliculus
nTPM: 31.1
2587 Male, age 74, left hemisphere 32.7
2664 Male, age 75, both hemispheres 32.2
1839 Male, age 51, unknown 32.0
2668 Female, age 75, unknown 31.8
1913 Female, age 42, unknown 31.7
2261 Male, age 18, unknown 30.8
1895 Male, age 76, right hemisphere 30.7
1995 Male, age 72, unknown 30.7
1796 Male, age 53, unknown 29.9
2087 Female, age 72, unknown 28.2
Ventral tegmental area
nTPM: 30.4
1942 Male, age 51, unknown 31.7
1915 Female, age 42, unknown 31.4
2410 Female, age 72, unknown 30.3
2223 Female, age 72, unknown 30.2
2021 Male, age 53, unknown 29.8
2218 Male, age 76, both hemispheres 28.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.5
Samples: 139

Max nTPM: 108.3
Min nTPM: 20.1
Std nTPM: 19.5
Median nTPM: 41.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 108.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 102.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 96.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 94.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 91.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 90.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 88.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 83.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 81.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 81.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 79.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.3
Sample A Female 12.6
Sample B Female 10.8
Sample C Male 7.3
Sample D Male 9.0
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 9.6
Min nTPM: 9.3
Sample B Female 9.6
Sample C Male 9.3
Sample D Male 9.3
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.4
Sample A Female 10.8
Sample B Female 9.5
Sample C Male 8.4
Sample D Male 9.3
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 9.5
Min nTPM: 8.1
Sample A Female 9.0
Sample B Female 8.1
Sample C Male 8.2
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.0
Sample A Male 22.6
Sample B Male 25.1
Sample C Female 20.7
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68546305 Antisense, RP_050120_02_C11, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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