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PDLIM2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.9 nTPM
HPA:52.9 nTPM
GTEx:63.3 nTPM
FANTOM5:15.7 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:78.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.2
2586 Male, age 75, left hemisphere 57.5
2219 Male, age 76, both hemispheres 47.4
2828 Female, age 72, unknown 46.6
2411 Female, age 72, unknown 45.1
1870 Female, age 42, unknown 42.7
1830 Male, age 51, unknown 40.6
2666 Male, age 74, left hemisphere 40.5
1827 Male, age 72, unknown 39.7
1833 Male, age 53, unknown 38.0
2019 Male, age 18, unknown 34.1
Dorsal raphe nucleus
nTPM: 46.3
2047 Male, age 72, unknown 49.3
2298 Female, age 72, unknown 49.0
2750 Male, age 76, both hemispheres 46.4
1828 Male, age 53, unknown 44.1
2016 Female, age 72, unknown 42.6
Inferior colliculus
nTPM: 37.8
2097 Female, age 72, unknown 40.8
1890 Male, age 53, unknown 38.4
1848 Female, age 42, unknown 36.7
2849 Male, age 72, unknown 35.4
Median raphe nucleus
nTPM: 42.9
2220 Male, age 76, midline 42.9
Pedunculopontine tegmental nucleus
nTPM: 42.1
2338 Male, age 61, both hemispheres 45.5
2334 Male, age 80, both hemispheres 40.5
1921 Female, age 85, both hemispheres 40.2
Periaquaductal grey, anterior
nTPM: 52.9
1947 Male, age 18, unknown 64.3
1795 Male, age 51, unknown 48.6
2502 Female, age 75, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 39.2
2850 Male, age 76, both hemispheres 40.8
1840 Male, age 53, unknown 39.1
2464 Female, age 72, unknown 39.1
1831 Male, age 72, unknown 37.9
Periaquaductal grey, lateral
nTPM: 40.3
2053 Male, age 18, unknown 42.8
2140 Male, age 76, both hemispheres 39.2
2272 Male, age 74, both hemispheres 39.0
Pretectal area
nTPM: 40.0
2667 Female, age 75, unknown 45.6
2825 Male, age 18, unknown 42.3
1944 Female, age 72, unknown 41.7
1815 Male, age 53, unknown 41.5
2007 Male, age 72, unknown 41.1
1816 Male, age 51, unknown 40.9
2224 Female, age 72, unknown 40.4
2407 Male, age 75, both hemispheres 38.9
2273 Male, age 74, both hemispheres 38.7
1817 Female, age 42, unknown 34.8
2316 Male, age 76, right hemisphere 34.3
Red nucleus
nTPM: 39.9
2588 Male, age 74, left hemisphere 43.4
2769 Male, age 72, unknown 43.4
1865 Male, age 51, unknown 42.6
2227 Male, age 72, unknown 42.2
2584 Male, age 75, left hemisphere 41.6
2503 Female, age 72, unknown 39.9
2725 Female, age 75, unknown 39.8
1821 Female, age 72, unknown 38.3
2823 Male, age 76, right hemisphere 38.0
1954 Female, age 42, unknown 37.8
1904 Male, age 53, unknown 37.6
2785 Male, age 18, unknown 34.5
Substantia nigra
nTPM: 50.2
1916 Female, age 42, unknown 64.3
1941 Male, age 53, unknown 64.0
2699 Male, age 18, unknown 55.0
1851 Male, age 51, unknown 54.4
2665 Male, age 74, both hemispheres 49.5
2583 Male, age 75, right hemisphere 43.9
2241 Male, age 72, unknown 43.5
2590 Female, age 75, unknown 43.0
2409 Female, age 72, unknown 42.3
1889 Female, age 72, unknown 41.8
Superior colliculus
nTPM: 41.1
2668 Female, age 75, unknown 44.7
1913 Female, age 42, unknown 44.0
2664 Male, age 75, both hemispheres 43.9
1796 Male, age 53, unknown 42.9
2087 Female, age 72, unknown 42.3
1995 Male, age 72, unknown 42.2
2261 Male, age 18, unknown 41.8
2587 Male, age 74, left hemisphere 40.2
1839 Male, age 51, unknown 36.3
1895 Male, age 76, right hemisphere 32.5
Ventral tegmental area
nTPM: 49.2
1915 Female, age 42, unknown 56.0
1942 Male, age 51, unknown 51.0
2410 Female, age 72, unknown 49.7
2223 Female, age 72, unknown 48.4
2218 Male, age 76, both hemispheres 46.2
2021 Male, age 53, unknown 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.3
Samples: 139

Max nTPM: 114.2
Min nTPM: 28.8
Std nTPM: 17.8
Median nTPM: 64.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 114.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 107.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 105.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 105.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 97.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 93.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 91.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 91.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 90.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 90.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 89.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.7
FF:10158-103A5 76 years, female 15.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.9
Pig sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.0
Sample A Female 4.4
Sample B Female 3.9
Sample C Male 2.6
Sample D Male 2.0
Periaqueductal gray
nTPM: 3.3
Samples: 3

Max nTPM: 3.9
Min nTPM: 2.7
Sample B Female 3.4
Sample C Male 3.9
Sample D Male 2.7
Substantia nigra
nTPM: 5.0
Samples: 4

Max nTPM: 7.5
Min nTPM: 3.5
Sample A Female 4.4
Sample B Female 7.5
Sample C Male 4.5
Sample D Male 3.5
Superior colliculi
nTPM: 4.7
Samples: 4

Max nTPM: 8.8
Min nTPM: 2.6
Sample A Female 4.6
Sample B Female 8.8
Sample C Male 2.6
Sample D Male 2.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 78.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.0
Samples: 4

Max nTPM: 89.6
Min nTPM: 65.9
Sample A Male 89.6
Sample B Male 65.9
Sample C Female 75.3
Sample D Female 81.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
2477 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6
2476 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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