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PDLIM2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:36.9 nTPM
HPA:36.9 nTPM
GTEx:40.0 nTPM
FANTOM5:18.2 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:52.7 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003880
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.9
Sample id Sample description nTPM
Hippocampus
nTPM: 36.9
2529 Female, age 94, left hemisphere 40.1
1898 Male, age 80, left hemisphere 37.7
2621 Female, age 67, right hemisphere 36.8
1911 Female, age 85, right hemisphere 36.0
1855 Male, age 76, left hemisphere 35.4
2148 Female, age 91, left hemisphere 35.4
Dentate gyrus
nTPM: 36.1
2528 Male, age 74, both hemispheres 38.8
2530 Female, age 94, left hemisphere 38.6
1927 Female, age 91, both hemispheres 35.9
2010 Male, age 76, both hemispheres 35.4
2531 Female, age 67, both hemispheres 34.8
2246 Female, age 85, both hemispheres 33.1
Entorhinal gyrus
nTPM: 35.4
2117 Female, age 91, right hemisphere 38.1
1787 Male, age 76, left hemisphere 37.0
1938 Female, age 85, left hemisphere 35.2
2764 Male, age 80, right hemisphere 35.2
2686 Male, age 75, right hemisphere 34.6
2613 Female, age 94, left hemisphere 32.5
Hippocampus, CA1
nTPM: 36.3
2749 Male, age 80, left hemisphere 37.4
2527 Male, age 74, both hemispheres 37.2
2082 Female, age 91, right hemisphere 36.5
2045 Male, age 76, both hemispheres 36.1
1873 Female, age 85, both hemispheres 34.4
Hippocampus, CA2
nTPM: 36.3
2437 Female, age 94, left hemisphere 39.0
1963 Male, age 80, left hemisphere 37.4
2249 Male, age 74, both hemispheres 37.4
2113 Female, age 91, right hemisphere 36.6
1892 Male, age 76, both hemispheres 35.3
1940 Female, age 85, left hemisphere 32.3
Hippocampus, CA3
nTPM: 35.8
1867 Male, age 76, both hemispheres 39.3
2436 Male, age 74, both hemispheres 39.2
2861 Female, age 67, both hemispheres 36.1
2620 Female, age 94, left hemisphere 33.9
1891 Female, age 85, both hemispheres 33.4
2137 Male, age 80, left hemisphere 33.1
Parahippocampal cortex
nTPM: 34.7
2018 Male, age 76, both hemispheres 38.6
2250 Female, age 67, right hemisphere 35.7
2692 Male, age 74, both hemispheres 35.2
1990 Female, age 91, right hemisphere 35.1
2622 Female, age 67, right hemisphere 35.1
2245 Female, age 91, both hemispheres 34.1
1850 Male, age 80, both hemispheres 34.0
1933 Female, age 85, both hemispheres 33.8
2532 Female, age 72, left hemisphere 33.5
2693 Female, age 94, both hemispheres 31.4
Perirhinal gyrus
nTPM: 34.1
1794 Male, age 80, right hemisphere 35.6
1841 Female, age 85, right hemisphere 34.7
2521 Female, age 94, right hemisphere 34.5
1847 Female, age 91, left hemisphere 33.9
2848 Male, age 76, right hemisphere 31.9
Subiculum
nTPM: 35.1
2619 Male, age 74, both hemispheres 37.8
2729 Female, age 91, right hemisphere 36.3
2042 Male, age 76, both hemispheres 35.0
1901 Male, age 80, both hemispheres 34.6
2438 Female, age 94, left hemisphere 34.1
1977 Female, age 85, both hemispheres 33.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.0
Samples: 197

Max nTPM: 84.5
Min nTPM: 15.1
Std nTPM: 12.5
Median nTPM: 38.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 84.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 75.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 73.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 69.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 69.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 68.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 68.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 67.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 65.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 65.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 63.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.2
FF:10153-102I9 76 years, female 23.9
FF:10169-103B7 60 years, female 12.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2.9
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.7
Sample A Female 3.4
Sample B Female 3.0
Sample C Male 3.6
Sample D Male 1.7
Entorhinal cortex
nTPM: 2.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.6
Sample A Female 3.0
Sample B Female 3.0
Sample C Male 2.5
Sample D Male 1.6
Subiculum
nTPM: 2.8
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.1
Sample A Female 3.4
Sample B Female 2.7
Sample C Male 2.1
Sample D Male 3.0
Ventral hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.6
Sample C Male 4.1
Sample D Male 3.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 11.4
Sample A Male 35.6
Sample B Male 31.7
Sample C Female 24.6
Sample D Female 11.4
Hippocampal formation
nTPM: 52.7
Samples: 4

Max nTPM: 78.1
Min nTPM: 35.5
Sample A Male 35.5
Sample B Male 40.8
Sample C Female 78.1
Sample D Female 56.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
2476 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 1.9
2477 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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