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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:53.2 nTPM
HPA:53.2 nTPM
GTEx:43.7 nTPM
FANTOM5:102.2 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:79.6 nTPM
Allen mouse:4.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004845Antibody CAB004242
Glial cells HighHigh
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Hippocampus
nTPM: 50.9
1898 Male, age 80, left hemisphere 56.1
1855 Male, age 76, left hemisphere 51.2
2529 Female, age 94, left hemisphere 50.5
2621 Female, age 67, right hemisphere 50.0
2148 Female, age 91, left hemisphere 48.9
1911 Female, age 85, right hemisphere 48.8
Dentate gyrus
nTPM: 50.0
2010 Male, age 76, both hemispheres 52.5
2530 Female, age 94, left hemisphere 51.0
1927 Female, age 91, both hemispheres 50.7
2528 Male, age 74, both hemispheres 49.9
2246 Female, age 85, both hemispheres 48.6
2531 Female, age 67, both hemispheres 47.1
Entorhinal gyrus
nTPM: 49.6
2764 Male, age 80, right hemisphere 52.5
1787 Male, age 76, left hemisphere 51.1
1938 Female, age 85, left hemisphere 50.9
2117 Female, age 91, right hemisphere 50.7
2686 Male, age 75, right hemisphere 46.6
2613 Female, age 94, left hemisphere 46.0
Hippocampus, CA1
nTPM: 53.2
2749 Male, age 80, left hemisphere 61.6
1873 Female, age 85, both hemispheres 54.2
2527 Male, age 74, both hemispheres 53.0
2045 Male, age 76, both hemispheres 48.7
2082 Female, age 91, right hemisphere 48.6
Hippocampus, CA2
nTPM: 52.1
1963 Male, age 80, left hemisphere 56.6
1892 Male, age 76, both hemispheres 55.8
2249 Male, age 74, both hemispheres 53.7
2437 Female, age 94, left hemisphere 49.5
1940 Female, age 85, left hemisphere 49.1
2113 Female, age 91, right hemisphere 48.0
Hippocampus, CA3
nTPM: 50.8
2137 Male, age 80, left hemisphere 53.3
2436 Male, age 74, both hemispheres 52.9
1867 Male, age 76, both hemispheres 52.6
1891 Female, age 85, both hemispheres 51.8
2620 Female, age 94, left hemisphere 47.3
2861 Female, age 67, both hemispheres 46.7
Parahippocampal cortex
nTPM: 49.7
1850 Male, age 80, both hemispheres 54.6
1990 Female, age 91, right hemisphere 52.3
1933 Female, age 85, both hemispheres 51.5
2250 Female, age 67, right hemisphere 51.1
2018 Male, age 76, both hemispheres 49.6
2245 Female, age 91, both hemispheres 48.9
2532 Female, age 72, left hemisphere 48.6
2693 Female, age 94, both hemispheres 47.6
2692 Male, age 74, both hemispheres 47.2
2622 Female, age 67, right hemisphere 45.7
Perirhinal gyrus
nTPM: 51.7
1847 Female, age 91, left hemisphere 55.0
1794 Male, age 80, right hemisphere 52.9
1841 Female, age 85, right hemisphere 52.0
2521 Female, age 94, right hemisphere 49.9
2848 Male, age 76, right hemisphere 48.4
Subiculum
nTPM: 49.9
1901 Male, age 80, both hemispheres 53.9
1977 Female, age 85, both hemispheres 51.7
2619 Male, age 74, both hemispheres 49.6
2042 Male, age 76, both hemispheres 48.6
2729 Female, age 91, right hemisphere 48.5
2438 Female, age 94, left hemisphere 47.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.7
Samples: 197

Max nTPM: 84.0
Min nTPM: 22.0
Std nTPM: 9.7
Median nTPM: 42.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 84.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 69.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 67.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 63.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 63.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 63.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 62.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 62.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 62.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 62.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 61.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 102.2
FF:10169-103B7 60 years, female 118.2
FF:10153-102I9 76 years, female 86.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.7
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.7
Sample A Female 27.2
Sample B Female 23.6
Sample C Male 21.7
Sample D Male 22.2
Entorhinal cortex
nTPM: 19.6
Samples: 4

Max nTPM: 23.3
Min nTPM: 17.2
Sample A Female 20.3
Sample B Female 23.3
Sample C Male 17.2
Sample D Male 17.4
Subiculum
nTPM: 19.9
Samples: 4

Max nTPM: 23.3
Min nTPM: 18.4
Sample A Female 23.3
Sample B Female 18.7
Sample C Male 19.0
Sample D Male 18.4
Ventral hippocampus
nTPM: 21.0
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.7
Sample A Female 24.0
Sample B Female 18.7
Sample C Male 19.6
Sample D Male 21.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 79.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 77.6
Samples: 4

Max nTPM: 84.0
Min nTPM: 72.9
Sample A Male 72.9
Sample B Male 79.0
Sample C Female 84.0
Sample D Female 74.5
Hippocampal formation
nTPM: 79.6
Samples: 4

Max nTPM: 94.4
Min nTPM: 72.2
Sample A Male 94.4
Sample B Male 72.2
Sample C Female 77.3
Sample D Female 74.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
69568944 Antisense, RP_050426_03_B06, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.