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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
RNA expressioni
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:39.9 nTPM
FANTOM5:112.7 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:78.5 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA004845Antibody CAB004242
Glial cells HighHigh



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.2
2481 Female, age 94, left hemisphere 56.2
2288 Male, age 75, left hemisphere 52.1
1854 Male, age 80, left hemisphere 50.2
2846 Female, age 79, unknown 49.6
2290 Female, age 72, unknown 49.1
1781 Male, age 74, unknown 49.0
1857 Female, age 85, left hemisphere 48.4
2289 Male, age 61, right hemisphere 46.8
Claustrum
nTPM: 49.4
2198 Male, age 80, both hemispheres 51.4
2392 Female, age 94, both hemispheres 51.3
1956 Male, age 74, unknown 51.2
2491 Male, age 75, both hemispheres 50.9
2568 Male, age 61, both hemispheres 49.1
2196 Female, age 79, unknown 48.9
2292 Female, age 85, both hemispheres 48.6
2284 Female, age 91, both hemispheres 47.7
2645 Female, age 72, unknown 45.6
Globus pallidus, externus
nTPM: 52.2
2772 Female, age 79, unknown 58.9
2395 Male, age 75, both hemispheres 55.5
1996 Male, age 80, right hemisphere 53.5
2646 Male, age 61, right hemisphere 46.8
2567 Female, age 72, unknown 46.5
Globus pallidus, internus
nTPM: 54.2
2287 Male, age 75, right hemisphere 60.6
2778 Female, age 91, both hemispheres 57.7
2483 Female, age 94, right hemisphere 55.7
1818 Male, age 74, unknown 53.5
2111 Female, age 85, right hemisphere 51.7
2037 Male, age 80, right hemisphere 51.5
2566 Female, age 72, unknown 48.9
Nucleus accumbens
nTPM: 51.5
2391 Female, age 94, left hemisphere 56.7
2286 Male, age 75, left hemisphere 55.4
1856 Female, age 91, right hemisphere 52.0
2698 Female, age 72, unknown 50.5
2824 Male, age 61, right hemisphere 50.4
1806 Female, age 85, left hemisphere 50.2
1783 Male, age 74, unknown 49.5
2732 Male, age 80, right hemisphere 47.4
Nucleus basalis of Meynert
nTPM: 49.8
2821 Male, age 75, both hemispheres 53.1
2393 Male, age 80, right hemisphere 49.9
2484 Female, age 94, left hemisphere 49.0
2569 Male, age 61, both hemispheres 47.3
Nucleus of the diagonal band
nTPM: 51.9
1812 Female, age 91, both hemispheres 56.1
2775 Male, age 80, right hemisphere 53.6
2029 Male, age 61, right hemisphere 51.6
2195 Female, age 85, both hemispheres 50.0
1979 Male, age 74, unknown 48.2
Olfactory tubercle
nTPM: 50.7
1846 Male, age 80, right hemisphere 52.4
1998 Female, age 91, both hemispheres 52.4
2487 Female, age 94, left hemisphere 49.5
2856 Male, age 75, right hemisphere 48.7
Putamen
nTPM: 49.7
2482 Female, age 94, left hemisphere 54.5
2466 Female, age 79, unknown 51.1
1937 Female, age 91, right hemisphere 50.5
1829 Male, age 74, unknown 49.1
2647 Male, age 75, left hemisphere 48.5
1838 Male, age 80, right hemisphere 48.4
2489 Female, age 72, unknown 45.9
Septal nuclei
nTPM: 51.1
2031 Female, age 72, unknown 55.4
1960 Male, age 74, unknown 53.9
2009 Female, age 91, both hemispheres 51.9
2629 Female, age 94, right hemisphere 50.1
2059 Female, age 85, both hemispheres 49.7
2394 Male, age 61, left hemisphere 48.3
2199 Male, age 80, right hemisphere 48.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.5
Samples: 246

Max nTPM: 68.8
Min nTPM: 20.6
Std nTPM: 6.7
Median nTPM: 36.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 64.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 60.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 57.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 55.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 54.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 53.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 52.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 52.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 51.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.2
Samples: 246

Max nTPM: 63.2
Min nTPM: 20.7
Std nTPM: 6.2
Median nTPM: 36.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 63.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 61.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 59.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 56.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 55.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 52.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 51.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 51.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 49.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 49.7
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 49.2
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Brain - Putamen (basal ganglia)
Average nTPM: 39.9
Samples: 205

Max nTPM: 82.8
Min nTPM: 24.6
Std nTPM: 6.7
Median nTPM: 38.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 82.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 66.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 60.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 55.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 55.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 54.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 54.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 54.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 53.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 53.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 51.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.9
FF:10164-103B2 76 years, female 73.9
Globus pallidus
Scaled Tags Per Million: 112.7
FF:10175-103C4 60 years, female 134.1
FF:10161-103A8 76 years, female 91.2
Nucleus accumbens
Scaled Tags Per Million: 58.8
FF:10037-101F1 23-56 years, mixed 58.8
Putamen
Scaled Tags Per Million: 79.7
FF:10176-103C5 60 years, female 79.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.5
Pig sample Sample description nTPM
Caudate
nTPM: 18.8
Samples: 4

Max nTPM: 19.5
Min nTPM: 18.1
Sample A Female 19.5
Sample B Female 18.1
Sample C Male 19.5
Sample D Male 18.1
Putamen
nTPM: 22.4
Samples: 4

Max nTPM: 28.0
Min nTPM: 18.6
Sample A Female 23.8
Sample B Female 19.3
Sample C Male 28.0
Sample D Male 18.6
Septum
nTPM: 22.2
Samples: 4

Max nTPM: 26.8
Min nTPM: 18.1
Sample A Female 24.1
Sample B Female 18.1
Sample C Male 26.8
Sample D Male 19.8
Ventral pallidum
nTPM: 20.7
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.2
Sample A Female 19.7
Sample B Female 19.7
Sample C Male 24.2
Sample D Male 19.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 78.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.7
Samples: 4

Max nTPM: 70.7
Min nTPM: 64.1
Sample A Male 70.7
Sample B Male 64.1
Sample C Female 69.0
Sample D Female 67.1
Septum
nTPM: 78.5
Samples: 4

Max nTPM: 83.1
Min nTPM: 75.7
Sample A Male 77.4
Sample B Male 77.6
Sample C Female 83.1
Sample D Female 75.7
Ventral forebrain
nTPM: 71.2
Samples: 4

Max nTPM: 72.7
Min nTPM: 68.5
Sample A Male 68.5
Sample B Male 71.0
Sample C Female 72.5
Sample D Female 72.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
69568944 Antisense, RP_050426_03_B06, Mouse strain C57BL/6J (56 days, male) 2.9
Pallidum
Expression energy: 2.8
69568944 Antisense, RP_050426_03_B06, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.