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SCPEP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.5 nTPM
HPA:29.5 nTPM
GTEx:23.6 nTPM
FANTOM5:48.2 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:20.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
1870 Female, age 42, unknown 27.3
2411 Female, age 72, unknown 26.6
1830 Male, age 51, unknown 26.4
1827 Male, age 72, unknown 26.2
2019 Male, age 18, unknown 26.0
2666 Male, age 74, left hemisphere 26.0
2828 Female, age 72, unknown 26.0
2219 Male, age 76, both hemispheres 25.6
1833 Male, age 53, unknown 25.5
2586 Male, age 75, left hemisphere 24.2
Dorsal raphe nucleus
nTPM: 29.5
2298 Female, age 72, unknown 32.6
2047 Male, age 72, unknown 29.7
1828 Male, age 53, unknown 29.0
2016 Female, age 72, unknown 28.8
2750 Male, age 76, both hemispheres 27.3
Inferior colliculus
nTPM: 25.8
1848 Female, age 42, unknown 26.3
2097 Female, age 72, unknown 26.0
1890 Male, age 53, unknown 25.4
2849 Male, age 72, unknown 25.3
Median raphe nucleus
nTPM: 27.6
2220 Male, age 76, midline 27.6
Pedunculopontine tegmental nucleus
nTPM: 27.8
2338 Male, age 61, both hemispheres 30.0
2334 Male, age 80, both hemispheres 27.9
1921 Female, age 85, both hemispheres 25.6
Periaquaductal grey, anterior
nTPM: 27.7
1947 Male, age 18, unknown 28.5
1795 Male, age 51, unknown 27.9
2502 Female, age 75, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 27.2
2850 Male, age 76, both hemispheres 28.1
1840 Male, age 53, unknown 28.0
2464 Female, age 72, unknown 26.8
1831 Male, age 72, unknown 26.0
Periaquaductal grey, lateral
nTPM: 28.1
2272 Male, age 74, both hemispheres 31.6
2140 Male, age 76, both hemispheres 27.0
2053 Male, age 18, unknown 25.8
Pretectal area
nTPM: 26.4
2273 Male, age 74, both hemispheres 29.8
2224 Female, age 72, unknown 28.9
2667 Female, age 75, unknown 27.5
2825 Male, age 18, unknown 27.3
2407 Male, age 75, both hemispheres 25.7
1944 Female, age 72, unknown 25.6
1817 Female, age 42, unknown 25.3
2007 Male, age 72, unknown 25.2
1815 Male, age 53, unknown 25.1
1816 Male, age 51, unknown 25.1
2316 Male, age 76, right hemisphere 25.1
Red nucleus
nTPM: 25.8
1821 Female, age 72, unknown 27.1
2725 Female, age 75, unknown 26.3
1904 Male, age 53, unknown 26.1
2769 Male, age 72, unknown 26.1
2227 Male, age 72, unknown 26.0
1954 Female, age 42, unknown 25.9
1865 Male, age 51, unknown 25.8
2503 Female, age 72, unknown 25.5
2823 Male, age 76, right hemisphere 25.5
2785 Male, age 18, unknown 25.2
2588 Male, age 74, left hemisphere 25.0
2584 Male, age 75, left hemisphere 24.8
Substantia nigra
nTPM: 27.6
2241 Male, age 72, unknown 29.5
1916 Female, age 42, unknown 28.6
1851 Male, age 51, unknown 28.5
1941 Male, age 53, unknown 28.5
2409 Female, age 72, unknown 27.6
2699 Male, age 18, unknown 27.5
1889 Female, age 72, unknown 26.5
2665 Male, age 74, both hemispheres 26.5
2590 Female, age 75, unknown 26.4
2583 Male, age 75, right hemisphere 25.9
Superior colliculus
nTPM: 26.0
2587 Male, age 74, left hemisphere 28.1
2261 Male, age 18, unknown 26.7
1895 Male, age 76, right hemisphere 26.1
1995 Male, age 72, unknown 26.0
1839 Male, age 51, unknown 25.9
2668 Female, age 75, unknown 25.9
1796 Male, age 53, unknown 25.8
1913 Female, age 42, unknown 25.3
2087 Female, age 72, unknown 25.3
2664 Male, age 75, both hemispheres 24.8
Ventral tegmental area
nTPM: 27.0
1915 Female, age 42, unknown 28.6
2021 Male, age 53, unknown 27.7
1942 Male, age 51, unknown 26.6
2410 Female, age 72, unknown 26.6
2218 Male, age 76, both hemispheres 26.3
2223 Female, age 72, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 59.2
Min nTPM: 9.6
Std nTPM: 6.3
Median nTPM: 22.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 59.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 42.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 35.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 34.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 34.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 33.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 33.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 33.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 33.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 32.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 32.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.2
FF:10158-103A5 76 years, female 48.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.8
Pig sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 28.8
Min nTPM: 11.2
Sample A Female 28.8
Sample B Female 14.3
Sample C Male 18.8
Sample D Male 11.2
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 13.7
Min nTPM: 11.6
Sample B Female 13.7
Sample C Male 11.6
Sample D Male 12.2
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.8
Sample A Female 21.5
Sample B Female 22.0
Sample C Male 14.8
Sample D Male 16.9
Superior colliculi
nTPM: 18.6
Samples: 4

Max nTPM: 24.6
Min nTPM: 15.0
Sample A Female 19.0
Sample B Female 24.6
Sample C Male 15.8
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 21.5
Min nTPM: 20.1
Sample A Male 20.1
Sample B Male 21.1
Sample C Female 21.5
Sample D Female 20.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67979030 Antisense, RP_040923_02_A11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.