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TMEM54
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.8 nTPM
HPA:68.8 nTPM
GTEx:58.8 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Pig:2.0 nTPM
Mouse:0.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.7
2586 Male, age 75, left hemisphere 78.4
2828 Female, age 72, unknown 65.8
1827 Male, age 72, unknown 65.0
1870 Female, age 42, unknown 64.9
1833 Male, age 53, unknown 64.3
2666 Male, age 74, left hemisphere 64.3
2411 Female, age 72, unknown 63.0
2219 Male, age 76, both hemispheres 62.5
1830 Male, age 51, unknown 62.1
2019 Male, age 18, unknown 56.3
Dorsal raphe nucleus
nTPM: 68.1
2016 Female, age 72, unknown 72.8
2047 Male, age 72, unknown 69.6
2298 Female, age 72, unknown 69.4
1828 Male, age 53, unknown 66.0
2750 Male, age 76, both hemispheres 62.9
Inferior colliculus
nTPM: 62.2
2849 Male, age 72, unknown 63.8
1848 Female, age 42, unknown 62.5
2097 Female, age 72, unknown 61.5
1890 Male, age 53, unknown 61.2
Median raphe nucleus
nTPM: 63.5
2220 Male, age 76, midline 63.5
Pedunculopontine tegmental nucleus
nTPM: 60.4
2334 Male, age 80, both hemispheres 63.1
1921 Female, age 85, both hemispheres 59.2
2338 Male, age 61, both hemispheres 59.0
Periaquaductal grey, anterior
nTPM: 64.0
1795 Male, age 51, unknown 66.9
2502 Female, age 75, unknown 64.9
1947 Male, age 18, unknown 60.2
Periaquaductal grey, dorsal
nTPM: 66.1
1840 Male, age 53, unknown 71.3
2850 Male, age 76, both hemispheres 67.0
2464 Female, age 72, unknown 63.4
1831 Male, age 72, unknown 62.6
Periaquaductal grey, lateral
nTPM: 66.0
2053 Male, age 18, unknown 69.9
2140 Male, age 76, both hemispheres 65.7
2272 Male, age 74, both hemispheres 62.6
Pretectal area
nTPM: 62.3
2825 Male, age 18, unknown 72.6
2407 Male, age 75, both hemispheres 66.2
2224 Female, age 72, unknown 65.6
2273 Male, age 74, both hemispheres 63.5
2316 Male, age 76, right hemisphere 62.5
2667 Female, age 75, unknown 60.9
1815 Male, age 53, unknown 60.0
1816 Male, age 51, unknown 59.7
1944 Female, age 72, unknown 58.6
1817 Female, age 42, unknown 58.5
2007 Male, age 72, unknown 56.8
Red nucleus
nTPM: 61.5
2584 Male, age 75, left hemisphere 67.6
2227 Male, age 72, unknown 64.3
2769 Male, age 72, unknown 63.6
2503 Female, age 72, unknown 63.3
1821 Female, age 72, unknown 62.2
1954 Female, age 42, unknown 61.4
2725 Female, age 75, unknown 61.1
1904 Male, age 53, unknown 60.6
2588 Male, age 74, left hemisphere 60.4
1865 Male, age 51, unknown 59.2
2785 Male, age 18, unknown 57.8
2823 Male, age 76, right hemisphere 56.1
Substantia nigra
nTPM: 68.8
2699 Male, age 18, unknown 82.4
1916 Female, age 42, unknown 72.6
2665 Male, age 74, both hemispheres 72.5
2583 Male, age 75, right hemisphere 72.1
1851 Male, age 51, unknown 71.3
2590 Female, age 75, unknown 66.6
2241 Male, age 72, unknown 66.5
2409 Female, age 72, unknown 62.2
1941 Male, age 53, unknown 61.2
1889 Female, age 72, unknown 60.8
Superior colliculus
nTPM: 64.7
2664 Male, age 75, both hemispheres 76.8
1796 Male, age 53, unknown 68.6
1839 Male, age 51, unknown 66.7
1995 Male, age 72, unknown 65.1
2668 Female, age 75, unknown 65.0
2587 Male, age 74, left hemisphere 62.5
1913 Female, age 42, unknown 62.2
2261 Male, age 18, unknown 62.2
2087 Female, age 72, unknown 60.2
1895 Male, age 76, right hemisphere 58.3
Ventral tegmental area
nTPM: 67.3
2021 Male, age 53, unknown 71.7
1915 Female, age 42, unknown 71.2
2223 Female, age 72, unknown 66.3
1942 Male, age 51, unknown 66.0
2410 Female, age 72, unknown 64.9
2218 Male, age 76, both hemispheres 63.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.8
Samples: 139

Max nTPM: 146.4
Min nTPM: 14.6
Std nTPM: 22.3
Median nTPM: 56.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 146.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 142.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 122.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 114.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 111.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 104.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 96.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 96.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 92.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 91.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 91.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.5
FF:10158-103A5 76 years, female 7.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.0
Pig sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.9
Sample A Female 1.6
Sample B Female 1.7
Sample C Male 1.3
Sample D Male 0.9
Periaqueductal gray
nTPM: 1.7
Samples: 3

Max nTPM: 2.1
Min nTPM: 1.3
Sample B Female 1.7
Sample C Male 2.1
Sample D Male 1.3
Substantia nigra
nTPM: 2.0
Samples: 4

Max nTPM: 3.3
Min nTPM: 0.8
Sample A Female 3.3
Sample B Female 1.3
Sample C Male 2.6
Sample D Male 0.8
Superior colliculi
nTPM: 1.6
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.7
Sample A Female 2.0
Sample B Female 2.5
Sample C Male 0.7
Sample D Male 1.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
76097730 Antisense, RP_060626_01_E02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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