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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA:11.4 nTPM
GTEx:13.7 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:2.3 nTPM
Mouse:9.3 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.8
2846 Female, age 79, unknown 11.6
2481 Female, age 94, left hemisphere 11.5
1781 Male, age 74, unknown 9.9
2289 Male, age 61, right hemisphere 9.8
1857 Female, age 85, left hemisphere 9.7
1854 Male, age 80, left hemisphere 8.6
2288 Male, age 75, left hemisphere 8.5
2290 Female, age 72, unknown 8.5
Claustrum
nTPM: 8.8
2292 Female, age 85, both hemispheres 12.5
2196 Female, age 79, unknown 9.7
2198 Male, age 80, both hemispheres 9.5
2392 Female, age 94, both hemispheres 8.7
1956 Male, age 74, unknown 8.5
2284 Female, age 91, both hemispheres 8.1
2645 Female, age 72, unknown 7.7
2568 Male, age 61, both hemispheres 7.5
2491 Male, age 75, both hemispheres 7.3
Globus pallidus, externus
nTPM: 11.4
2772 Female, age 79, unknown 13.7
2395 Male, age 75, both hemispheres 12.8
1996 Male, age 80, right hemisphere 12.7
2646 Male, age 61, right hemisphere 10.0
2567 Female, age 72, unknown 8.0
Globus pallidus, internus
nTPM: 10.3
2037 Male, age 80, right hemisphere 12.7
1818 Male, age 74, unknown 10.9
2778 Female, age 91, both hemispheres 10.5
2111 Female, age 85, right hemisphere 10.4
2483 Female, age 94, right hemisphere 10.3
2287 Male, age 75, right hemisphere 8.8
2566 Female, age 72, unknown 8.6
Nucleus accumbens
nTPM: 9.2
2391 Female, age 94, left hemisphere 12.3
2732 Male, age 80, right hemisphere 10.0
1806 Female, age 85, left hemisphere 9.9
2286 Male, age 75, left hemisphere 9.5
1783 Male, age 74, unknown 8.5
2698 Female, age 72, unknown 8.4
2824 Male, age 61, right hemisphere 7.6
1856 Female, age 91, right hemisphere 7.3
Nucleus basalis of Meynert
nTPM: 10.4
2821 Male, age 75, both hemispheres 14.5
2569 Male, age 61, both hemispheres 9.6
2484 Female, age 94, left hemisphere 8.9
2393 Male, age 80, right hemisphere 8.5
Nucleus of the diagonal band
nTPM: 9.3
1812 Female, age 91, both hemispheres 14.6
1979 Male, age 74, unknown 9.2
2195 Female, age 85, both hemispheres 8.0
2775 Male, age 80, right hemisphere 7.5
2029 Male, age 61, right hemisphere 7.0
Olfactory tubercle
nTPM: 7.8
1846 Male, age 80, right hemisphere 8.6
1998 Female, age 91, both hemispheres 7.9
2487 Female, age 94, left hemisphere 7.4
2856 Male, age 75, right hemisphere 7.2
Putamen
nTPM: 9.3
2482 Female, age 94, left hemisphere 11.7
2466 Female, age 79, unknown 11.2
1829 Male, age 74, unknown 9.1
2647 Male, age 75, left hemisphere 8.9
2489 Female, age 72, unknown 8.7
1937 Female, age 91, right hemisphere 7.9
1838 Male, age 80, right hemisphere 7.8
Septal nuclei
nTPM: 10.0
2009 Female, age 91, both hemispheres 13.7
2199 Male, age 80, right hemisphere 10.8
2394 Male, age 61, left hemisphere 10.0
2629 Female, age 94, right hemisphere 9.4
2059 Female, age 85, both hemispheres 9.2
2031 Female, age 72, unknown 8.7
1960 Male, age 74, unknown 8.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.7
Samples: 246

Max nTPM: 196.1
Min nTPM: 2.0
Std nTPM: 15.9
Median nTPM: 9.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 196.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 85.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 83.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 62.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 50.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 48.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 39.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 37.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 34.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 33.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 33.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.0
Samples: 246

Max nTPM: 66.9
Min nTPM: 0.9
Std nTPM: 7.1
Median nTPM: 6.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 66.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 46.4
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 31.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 30.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 27.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 27.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 25.9
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 25.5
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 25.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 24.7
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 23.7
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Brain - Putamen (basal ganglia)
Average nTPM: 11.0
Samples: 205

Max nTPM: 99.3
Min nTPM: 1.5
Std nTPM: 9.2
Median nTPM: 9.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 99.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 54.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 43.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 30.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 30.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 28.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 27.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 24.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 23.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 22.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 22.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.8
FF:10164-103B2 76 years, female 13.8
Globus pallidus
Scaled Tags Per Million: 9.9
FF:10175-103C4 60 years, female 10.2
FF:10161-103A8 76 years, female 9.5
Nucleus accumbens
Scaled Tags Per Million: 16.0
FF:10037-101F1 23-56 years, mixed 16.0
Putamen
Scaled Tags Per Million: 4.6
FF:10176-103C5 60 years, female 4.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.3
Pig sample Sample description nTPM
Caudate
nTPM: 1.6
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.0
Sample A Female 2.7
Sample B Female 1.0
Sample C Male 1.5
Sample D Male 1.3
Putamen
nTPM: 1.3
Samples: 4

Max nTPM: 3.7
Min nTPM: 0.2
Sample A Female 3.7
Sample B Female 0.2
Sample C Male 0.5
Sample D Male 0.6
Septum
nTPM: 2.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.5
Sample A Female 1.6
Sample B Female 1.5
Sample C Male 3.8
Sample D Male 2.5
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.3
Sample C Male 2.0
Sample D Male 1.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.2
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.7
Sample A Male 3.7
Sample B Male 3.8
Sample C Female 4.1
Sample D Female 5.1
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 11.4
Min nTPM: 7.0
Sample A Male 7.0
Sample B Male 11.4
Sample C Female 8.2
Sample D Female 10.6
Ventral forebrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.7
Sample A Male 2.1
Sample B Male 1.2
Sample C Female 0.7
Sample D Female 2.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
100144881 Antisense, RP_110421_04_C12, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
100144881 Antisense, RP_110421_04_C12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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