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UBL3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.8 nTPM
HPA:54.8 nTPM
GTEx:51.7 nTPM
FANTOM5:120.1 Scaled Tags Per Million
Pig:90.2 nTPM
Mouse:139.2 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.7
2586 Male, age 75, left hemisphere 54.7
1870 Female, age 42, unknown 51.8
2019 Male, age 18, unknown 50.1
2411 Female, age 72, unknown 49.9
1830 Male, age 51, unknown 49.8
1833 Male, age 53, unknown 49.7
2666 Male, age 74, left hemisphere 41.3
1827 Male, age 72, unknown 41.0
2219 Male, age 76, both hemispheres 39.8
2828 Female, age 72, unknown 38.7
Dorsal raphe nucleus
nTPM: 47.1
2016 Female, age 72, unknown 48.7
1828 Male, age 53, unknown 48.6
2750 Male, age 76, both hemispheres 48.5
2298 Female, age 72, unknown 45.4
2047 Male, age 72, unknown 44.1
Inferior colliculus
nTPM: 45.8
2097 Female, age 72, unknown 47.8
1890 Male, age 53, unknown 47.4
1848 Female, age 42, unknown 47.2
2849 Male, age 72, unknown 40.8
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Pedunculopontine tegmental nucleus
nTPM: 41.5
2334 Male, age 80, both hemispheres 44.8
1921 Female, age 85, both hemispheres 43.7
2338 Male, age 61, both hemispheres 35.9
Periaquaductal grey, anterior
nTPM: 45.5
1947 Male, age 18, unknown 49.8
2502 Female, age 75, unknown 49.3
1795 Male, age 51, unknown 37.2
Periaquaductal grey, dorsal
nTPM: 42.0
1840 Male, age 53, unknown 43.8
2464 Female, age 72, unknown 42.7
1831 Male, age 72, unknown 41.2
2850 Male, age 76, both hemispheres 40.4
Periaquaductal grey, lateral
nTPM: 39.0
2053 Male, age 18, unknown 41.4
2272 Male, age 74, both hemispheres 41.0
2140 Male, age 76, both hemispheres 34.6
Pretectal area
nTPM: 42.0
2007 Male, age 72, unknown 45.0
2667 Female, age 75, unknown 44.5
1817 Female, age 42, unknown 43.8
1815 Male, age 53, unknown 43.6
2825 Male, age 18, unknown 43.6
2273 Male, age 74, both hemispheres 43.1
2407 Male, age 75, both hemispheres 41.7
2224 Female, age 72, unknown 40.8
1944 Female, age 72, unknown 39.6
1816 Male, age 51, unknown 39.4
2316 Male, age 76, right hemisphere 37.3
Red nucleus
nTPM: 54.8
1821 Female, age 72, unknown 68.4
1954 Female, age 42, unknown 62.3
1904 Male, age 53, unknown 61.6
1865 Male, age 51, unknown 60.0
2227 Male, age 72, unknown 57.7
2503 Female, age 72, unknown 57.5
2769 Male, age 72, unknown 57.4
2584 Male, age 75, left hemisphere 48.2
2823 Male, age 76, right hemisphere 48.1
2785 Male, age 18, unknown 48.0
2588 Male, age 74, left hemisphere 45.2
2725 Female, age 75, unknown 43.8
Substantia nigra
nTPM: 47.0
2583 Male, age 75, right hemisphere 57.9
1889 Female, age 72, unknown 48.8
1851 Male, age 51, unknown 47.9
1916 Female, age 42, unknown 47.7
2241 Male, age 72, unknown 47.5
2409 Female, age 72, unknown 46.4
2699 Male, age 18, unknown 45.4
1941 Male, age 53, unknown 44.7
2590 Female, age 75, unknown 43.3
2665 Male, age 74, both hemispheres 40.4
Superior colliculus
nTPM: 44.3
2668 Female, age 75, unknown 50.7
1995 Male, age 72, unknown 49.7
2664 Male, age 75, both hemispheres 47.6
1895 Male, age 76, right hemisphere 46.0
1839 Male, age 51, unknown 45.8
1913 Female, age 42, unknown 45.3
2587 Male, age 74, left hemisphere 42.5
2087 Female, age 72, unknown 38.8
2261 Male, age 18, unknown 38.6
1796 Male, age 53, unknown 37.8
Ventral tegmental area
nTPM: 46.5
2223 Female, age 72, unknown 51.3
2410 Female, age 72, unknown 49.9
1942 Male, age 51, unknown 47.4
2218 Male, age 76, both hemispheres 45.4
1915 Female, age 42, unknown 45.1
2021 Male, age 53, unknown 40.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.7
Samples: 139

Max nTPM: 88.4
Min nTPM: 30.3
Std nTPM: 10.4
Median nTPM: 49.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 88.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 88.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 76.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 71.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 71.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 70.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 69.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 69.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.1
FF:10158-103A5 76 years, female 120.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.2
Pig sample Sample description nTPM
Midbrain
nTPM: 90.3
Samples: 4

Max nTPM: 120.6
Min nTPM: 71.6
Sample A Female 120.6
Sample B Female 71.6
Sample C Male 86.6
Sample D Male 82.2
Periaqueductal gray
nTPM: 61.5
Samples: 3

Max nTPM: 70.8
Min nTPM: 54.3
Sample B Female 70.8
Sample C Male 59.4
Sample D Male 54.3
Substantia nigra
nTPM: 67.1
Samples: 4

Max nTPM: 83.2
Min nTPM: 55.7
Sample A Female 83.2
Sample B Female 55.7
Sample C Male 61.5
Sample D Male 68.1
Superior colliculi
nTPM: 80.2
Samples: 4

Max nTPM: 96.7
Min nTPM: 55.3
Sample A Female 96.7
Sample B Female 55.3
Sample C Male 88.2
Sample D Male 80.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.2
Samples: 4

Max nTPM: 144.6
Min nTPM: 133.3
Sample A Male 142.3
Sample B Male 136.4
Sample C Female 133.3
Sample D Female 144.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
1885 Antisense, RP_040604_01_D06, Mouse strain C57BL/6J (56 days, male) 2.1
1884 Antisense, RP_040604_01_D06, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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