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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:41.8 nTPM
FANTOM5:150.7 Scaled Tags Per Million
Pig:47.0 nTPM
Mouse:110.5 nTPM
Allen mouse:8.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044701Antibody HPA048145
Glial cells Not detectedNot detected
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Hippocampus
nTPM: 39.1
1898 Male, age 80, left hemisphere 45.2
2148 Female, age 91, left hemisphere 40.8
1855 Male, age 76, left hemisphere 40.5
2621 Female, age 67, right hemisphere 37.5
2529 Female, age 94, left hemisphere 37.4
1911 Female, age 85, right hemisphere 33.5
Dentate gyrus
nTPM: 38.7
1927 Female, age 91, both hemispheres 43.1
2010 Male, age 76, both hemispheres 42.8
2246 Female, age 85, both hemispheres 40.6
2530 Female, age 94, left hemisphere 37.4
2531 Female, age 67, both hemispheres 34.3
2528 Male, age 74, both hemispheres 34.2
Entorhinal gyrus
nTPM: 40.1
2764 Male, age 80, right hemisphere 43.9
1938 Female, age 85, left hemisphere 43.3
1787 Male, age 76, left hemisphere 41.7
2613 Female, age 94, left hemisphere 41.4
2117 Female, age 91, right hemisphere 35.4
2686 Male, age 75, right hemisphere 35.0
Hippocampus, CA1
nTPM: 43.1
2749 Male, age 80, left hemisphere 56.7
1873 Female, age 85, both hemispheres 45.4
2045 Male, age 76, both hemispheres 42.3
2527 Male, age 74, both hemispheres 38.2
2082 Female, age 91, right hemisphere 32.9
Hippocampus, CA2
nTPM: 38.2
1963 Male, age 80, left hemisphere 45.9
1892 Male, age 76, both hemispheres 44.4
2437 Female, age 94, left hemisphere 40.5
2249 Male, age 74, both hemispheres 34.8
2113 Female, age 91, right hemisphere 33.2
1940 Female, age 85, left hemisphere 30.4
Hippocampus, CA3
nTPM: 40.6
2620 Female, age 94, left hemisphere 45.3
2137 Male, age 80, left hemisphere 42.3
2861 Female, age 67, both hemispheres 41.8
2436 Male, age 74, both hemispheres 40.6
1867 Male, age 76, both hemispheres 39.1
1891 Female, age 85, both hemispheres 34.5
Parahippocampal cortex
nTPM: 38.9
1850 Male, age 80, both hemispheres 47.7
1990 Female, age 91, right hemisphere 40.9
1933 Female, age 85, both hemispheres 39.6
2622 Female, age 67, right hemisphere 38.6
2245 Female, age 91, both hemispheres 37.9
2532 Female, age 72, left hemisphere 37.8
2693 Female, age 94, both hemispheres 37.7
2250 Female, age 67, right hemisphere 36.6
2018 Male, age 76, both hemispheres 36.2
2692 Male, age 74, both hemispheres 35.8
Perirhinal gyrus
nTPM: 45.1
1847 Female, age 91, left hemisphere 52.2
1794 Male, age 80, right hemisphere 48.5
1841 Female, age 85, right hemisphere 43.8
2521 Female, age 94, right hemisphere 41.3
2848 Male, age 76, right hemisphere 39.5
Subiculum
nTPM: 37.5
2619 Male, age 74, both hemispheres 40.6
2438 Female, age 94, left hemisphere 39.8
1977 Female, age 85, both hemispheres 39.4
1901 Male, age 80, both hemispheres 38.0
2729 Female, age 91, right hemisphere 37.4
2042 Male, age 76, both hemispheres 30.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.8
Samples: 197

Max nTPM: 90.4
Min nTPM: 10.7
Std nTPM: 17.4
Median nTPM: 37.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 90.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 89.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 87.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 85.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 80.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 79.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 79.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 79.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 78.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 77.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 77.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 150.7
FF:10169-103B7 60 years, female 172.6
FF:10153-102I9 76 years, female 128.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 45.0
Samples: 4

Max nTPM: 53.1
Min nTPM: 40.4
Sample A Female 53.1
Sample B Female 44.5
Sample C Male 41.9
Sample D Male 40.4
Entorhinal cortex
nTPM: 46.3
Samples: 4

Max nTPM: 50.0
Min nTPM: 39.3
Sample A Female 46.6
Sample B Female 50.0
Sample C Male 49.1
Sample D Male 39.3
Subiculum
nTPM: 47.0
Samples: 4

Max nTPM: 59.3
Min nTPM: 41.2
Sample A Female 59.3
Sample B Female 44.6
Sample C Male 42.9
Sample D Male 41.2
Ventral hippocampus
nTPM: 41.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 37.9
Sample A Female 40.1
Sample B Female 37.9
Sample C Male 47.1
Sample D Male 42.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 110.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.8
Samples: 4

Max nTPM: 106.1
Min nTPM: 93.7
Sample A Male 97.7
Sample B Male 93.7
Sample C Female 101.8
Sample D Female 106.1
Hippocampal formation
nTPM: 110.5
Samples: 4

Max nTPM: 126.1
Min nTPM: 102.8
Sample A Male 105.9
Sample B Male 107.0
Sample C Female 126.1
Sample D Female 102.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.4
378550 Antisense, RP_040625_01_B04, Mouse strain C57BL/6J (56 days, male) 10.0
81599638 Antisense, RP_071203_03_F04, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.