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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
RNA expressioni
Consensus:14.2 nTPM
HPA:14.2 nTPM
GTEx:13.1 nTPM
FANTOM5:33.0 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:6.3 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028020Antibody HPA028095Antibody HPA028333
Glial cells Not detectedNot detectedLow
Neuronal cells LowLow-






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Hippocampus
nTPM: 6.9
1911 Female, age 85, right hemisphere 12.5
2148 Female, age 91, left hemisphere 10.3
1898 Male, age 80, left hemisphere 6.4
2621 Female, age 67, right hemisphere 6.1
1855 Male, age 76, left hemisphere 5.2
2529 Female, age 94, left hemisphere 1.0
Dentate gyrus
nTPM: 8.5
1927 Female, age 91, both hemispheres 16.5
2531 Female, age 67, both hemispheres 9.6
2246 Female, age 85, both hemispheres 8.2
2528 Male, age 74, both hemispheres 8.0
2010 Male, age 76, both hemispheres 6.2
2530 Female, age 94, left hemisphere 2.6
Entorhinal gyrus
nTPM: 10.7
2613 Female, age 94, left hemisphere 16.9
1938 Female, age 85, left hemisphere 14.6
2686 Male, age 75, right hemisphere 11.7
2764 Male, age 80, right hemisphere 8.8
1787 Male, age 76, left hemisphere 6.9
2117 Female, age 91, right hemisphere 5.1
Hippocampus, CA1
nTPM: 10.6
2082 Female, age 91, right hemisphere 13.5
1873 Female, age 85, both hemispheres 12.1
2045 Male, age 76, both hemispheres 11.6
2749 Male, age 80, left hemisphere 9.8
2527 Male, age 74, both hemispheres 5.9
Hippocampus, CA2
nTPM: 8.9
1940 Female, age 85, left hemisphere 12.6
2113 Female, age 91, right hemisphere 10.6
2249 Male, age 74, both hemispheres 9.7
1892 Male, age 76, both hemispheres 9.6
2437 Female, age 94, left hemisphere 6.4
1963 Male, age 80, left hemisphere 4.8
Hippocampus, CA3
nTPM: 10.1
2137 Male, age 80, left hemisphere 16.2
2620 Female, age 94, left hemisphere 11.3
1891 Female, age 85, both hemispheres 9.8
1867 Male, age 76, both hemispheres 8.6
2436 Male, age 74, both hemispheres 8.1
2861 Female, age 67, both hemispheres 6.4
Parahippocampal cortex
nTPM: 12.3
2693 Female, age 94, both hemispheres 19.4
1850 Male, age 80, both hemispheres 14.8
2622 Female, age 67, right hemisphere 14.6
2532 Female, age 72, left hemisphere 14.3
1933 Female, age 85, both hemispheres 13.6
2250 Female, age 67, right hemisphere 12.0
2245 Female, age 91, both hemispheres 10.6
1990 Female, age 91, right hemisphere 9.9
2692 Male, age 74, both hemispheres 9.1
2018 Male, age 76, both hemispheres 4.1
Perirhinal gyrus
nTPM: 14.2
1841 Female, age 85, right hemisphere 19.2
2848 Male, age 76, right hemisphere 15.2
2521 Female, age 94, right hemisphere 13.4
1847 Female, age 91, left hemisphere 12.5
1794 Male, age 80, right hemisphere 10.5
Subiculum
nTPM: 7.5
2438 Female, age 94, left hemisphere 9.6
2729 Female, age 91, right hemisphere 9.4
1901 Male, age 80, both hemispheres 9.1
1977 Female, age 85, both hemispheres 8.2
2619 Male, age 74, both hemispheres 6.5
2042 Male, age 76, both hemispheres 2.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.1
Samples: 197

Max nTPM: 28.4
Min nTPM: 6.0
Std nTPM: 3.6
Median nTPM: 12.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 28.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 26.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 26.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 23.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 21.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 21.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 20.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 20.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 20.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 20.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 19.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.0
FF:10169-103B7 60 years, female 37.6
FF:10153-102I9 76 years, female 28.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.9
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.9
Sample A Female 9.9
Sample B Female 8.9
Sample C Male 11.3
Sample D Male 9.4
Entorhinal cortex
nTPM: 9.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 10.8
Sample C Male 8.4
Sample D Male 9.7
Subiculum
nTPM: 8.8
Samples: 4

Max nTPM: 9.1
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 9.0
Sample C Male 8.9
Sample D Male 9.1
Ventral hippocampus
nTPM: 9.1
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.2
Sample A Female 9.6
Sample B Female 8.9
Sample C Male 8.2
Sample D Male 9.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 2.1
Sample A Male 5.3
Sample B Male 8.8
Sample C Female 5.4
Sample D Female 2.1
Hippocampal formation
nTPM: 6.4
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.3
Sample A Male 6.4
Sample B Male 6.5
Sample C Female 5.3
Sample D Female 7.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
68341746 Antisense, RP_041207_02_B03, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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