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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.3 nTPM
HPA:7.3 nTPM
GTEx:7.4 nTPM
FANTOM5:30.6 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:6.1 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.8
2288 Male, age 75, left hemisphere 7.1
2290 Female, age 72, unknown 7.0
2846 Female, age 79, unknown 7.0
2481 Female, age 94, left hemisphere 6.9
1857 Female, age 85, left hemisphere 6.7
2289 Male, age 61, right hemisphere 6.7
1854 Male, age 80, left hemisphere 6.6
1781 Male, age 74, unknown 6.3
Claustrum
nTPM: 6.7
2198 Male, age 80, both hemispheres 7.1
2392 Female, age 94, both hemispheres 6.9
2491 Male, age 75, both hemispheres 6.8
2284 Female, age 91, both hemispheres 6.7
2645 Female, age 72, unknown 6.7
1956 Male, age 74, unknown 6.5
2196 Female, age 79, unknown 6.5
2292 Female, age 85, both hemispheres 6.4
2568 Male, age 61, both hemispheres 6.2
Globus pallidus, externus
nTPM: 7.1
1996 Male, age 80, right hemisphere 7.8
2395 Male, age 75, both hemispheres 7.0
2772 Female, age 79, unknown 7.0
2567 Female, age 72, unknown 6.9
2646 Male, age 61, right hemisphere 6.6
Globus pallidus, internus
nTPM: 7.0
2778 Female, age 91, both hemispheres 7.8
2287 Male, age 75, right hemisphere 7.1
2483 Female, age 94, right hemisphere 7.0
2111 Female, age 85, right hemisphere 6.9
1818 Male, age 74, unknown 6.8
2037 Male, age 80, right hemisphere 6.6
2566 Female, age 72, unknown 6.5
Nucleus accumbens
nTPM: 7.2
2286 Male, age 75, left hemisphere 7.9
1806 Female, age 85, left hemisphere 7.6
2391 Female, age 94, left hemisphere 7.2
2824 Male, age 61, right hemisphere 7.2
1783 Male, age 74, unknown 7.1
1856 Female, age 91, right hemisphere 7.1
2698 Female, age 72, unknown 7.1
2732 Male, age 80, right hemisphere 6.8
Nucleus basalis of Meynert
nTPM: 6.6
2393 Male, age 80, right hemisphere 7.1
2569 Male, age 61, both hemispheres 6.5
2484 Female, age 94, left hemisphere 6.4
2821 Male, age 75, both hemispheres 6.2
Nucleus of the diagonal band
nTPM: 7.0
1812 Female, age 91, both hemispheres 7.3
2775 Male, age 80, right hemisphere 7.3
1979 Male, age 74, unknown 7.2
2029 Male, age 61, right hemisphere 6.8
2195 Female, age 85, both hemispheres 6.6
Olfactory tubercle
nTPM: 7.3
1846 Male, age 80, right hemisphere 7.9
2487 Female, age 94, left hemisphere 7.8
2856 Male, age 75, right hemisphere 7.1
1998 Female, age 91, both hemispheres 6.4
Putamen
nTPM: 6.9
2482 Female, age 94, left hemisphere 7.3
1937 Female, age 91, right hemisphere 7.1
2466 Female, age 79, unknown 7.1
2489 Female, age 72, unknown 7.1
1829 Male, age 74, unknown 6.9
1838 Male, age 80, right hemisphere 6.8
2647 Male, age 75, left hemisphere 6.2
Septal nuclei
nTPM: 6.8
1960 Male, age 74, unknown 7.1
2009 Female, age 91, both hemispheres 7.1
2031 Female, age 72, unknown 6.9
2059 Female, age 85, both hemispheres 6.9
2199 Male, age 80, right hemisphere 6.7
2629 Female, age 94, right hemisphere 6.6
2394 Male, age 61, left hemisphere 6.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.1
Samples: 246

Max nTPM: 15.4
Min nTPM: 2.3
Std nTPM: 1.9
Median nTPM: 6.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 14.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 12.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 11.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 11.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 11.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 11.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 10.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 10.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 10.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.2
Samples: 246

Max nTPM: 14.0
Min nTPM: 2.8
Std nTPM: 1.8
Median nTPM: 7.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 14.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 13.0
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 12.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 12.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 12.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 11.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 11.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 11.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 11.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 11.1
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 10.9
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Brain - Putamen (basal ganglia)
Average nTPM: 7.4
Samples: 205

Max nTPM: 16.4
Min nTPM: 2.7
Std nTPM: 2.0
Median nTPM: 7.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 16.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 14.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 13.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 12.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 11.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 11.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 11.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 11.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 10.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 10.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 10.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.6
FF:10164-103B2 76 years, female 30.6
Globus pallidus
Scaled Tags Per Million: 18.6
FF:10161-103A8 76 years, female 19.1
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 18.8
FF:10037-101F1 23-56 years, mixed 18.8
Putamen
Scaled Tags Per Million: 21.3
FF:10176-103C5 60 years, female 21.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.2
Sample C Male 8.0
Sample D Male 7.1
Putamen
nTPM: 7.8
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.2
Sample A Female 7.0
Sample B Female 7.3
Sample C Male 10.7
Sample D Male 6.2
Septum
nTPM: 7.2
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.8
Sample A Female 7.9
Sample B Female 7.6
Sample C Male 7.5
Sample D Male 5.8
Ventral pallidum
nTPM: 7.2
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.6
Sample A Female 7.4
Sample B Female 8.7
Sample C Male 5.6
Sample D Male 7.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.3
Samples: 4

Max nTPM: 5.9
Min nTPM: 2.3
Sample A Male 5.9
Sample B Male 4.8
Sample C Female 4.1
Sample D Female 2.3
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.2
Sample A Male 7.5
Sample B Male 5.8
Sample C Female 5.9
Sample D Female 5.2
Ventral forebrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.1
Sample A Male 5.2
Sample B Male 4.5
Sample C Female 4.1
Sample D Female 4.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74056138 Antisense, RP_051019_03_D03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74056138 Antisense, RP_051019_03_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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