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CBX3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:57.8 nTPM
HPA:57.8 nTPM
GTEx:59.8 nTPM
FANTOM5:189.1 Scaled Tags Per Million
Pig:41.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA004902Antibody CAB001973
Glial cells MediumLow
Neuronal cells MediumNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.8
2481 Female, age 94, left hemisphere 55.9
2288 Male, age 75, left hemisphere 55.3
2846 Female, age 79, unknown 54.9
2290 Female, age 72, unknown 54.6
1857 Female, age 85, left hemisphere 53.5
1781 Male, age 74, unknown 52.5
2289 Male, age 61, right hemisphere 52.3
1854 Male, age 80, left hemisphere 51.4
Claustrum
nTPM: 54.3
2292 Female, age 85, both hemispheres 57.0
2491 Male, age 75, both hemispheres 56.5
2392 Female, age 94, both hemispheres 55.2
1956 Male, age 74, unknown 54.9
2284 Female, age 91, both hemispheres 54.2
2198 Male, age 80, both hemispheres 53.6
2196 Female, age 79, unknown 53.4
2568 Male, age 61, both hemispheres 52.5
2645 Female, age 72, unknown 51.8
Globus pallidus, externus
nTPM: 55.4
2395 Male, age 75, both hemispheres 58.4
2772 Female, age 79, unknown 57.1
1996 Male, age 80, right hemisphere 57.0
2567 Female, age 72, unknown 54.2
2646 Male, age 61, right hemisphere 50.2
Globus pallidus, internus
nTPM: 57.8
2287 Male, age 75, right hemisphere 61.7
2778 Female, age 91, both hemispheres 59.8
2111 Female, age 85, right hemisphere 59.1
2483 Female, age 94, right hemisphere 57.6
1818 Male, age 74, unknown 57.1
2037 Male, age 80, right hemisphere 55.7
2566 Female, age 72, unknown 53.9
Nucleus accumbens
nTPM: 54.5
2286 Male, age 75, left hemisphere 55.7
2391 Female, age 94, left hemisphere 55.4
1806 Female, age 85, left hemisphere 55.0
2824 Male, age 61, right hemisphere 54.9
2698 Female, age 72, unknown 54.6
1856 Female, age 91, right hemisphere 54.0
2732 Male, age 80, right hemisphere 53.4
1783 Male, age 74, unknown 53.0
Nucleus basalis of Meynert
nTPM: 53.1
2821 Male, age 75, both hemispheres 54.7
2393 Male, age 80, right hemisphere 54.5
2484 Female, age 94, left hemisphere 53.6
2569 Male, age 61, both hemispheres 49.6
Nucleus of the diagonal band
nTPM: 54.3
1812 Female, age 91, both hemispheres 56.0
1979 Male, age 74, unknown 54.5
2775 Male, age 80, right hemisphere 54.4
2195 Female, age 85, both hemispheres 53.8
2029 Male, age 61, right hemisphere 52.8
Olfactory tubercle
nTPM: 53.4
2487 Female, age 94, left hemisphere 54.7
1998 Female, age 91, both hemispheres 53.5
2856 Male, age 75, right hemisphere 52.9
1846 Male, age 80, right hemisphere 52.7
Putamen
nTPM: 52.5
1829 Male, age 74, unknown 54.8
2466 Female, age 79, unknown 54.1
2482 Female, age 94, left hemisphere 53.6
1937 Female, age 91, right hemisphere 52.7
1838 Male, age 80, right hemisphere 51.5
2647 Male, age 75, left hemisphere 50.8
2489 Female, age 72, unknown 49.9
Septal nuclei
nTPM: 53.2
2031 Female, age 72, unknown 55.5
1960 Male, age 74, unknown 54.7
2394 Male, age 61, left hemisphere 54.1
2009 Female, age 91, both hemispheres 53.1
2059 Female, age 85, both hemispheres 52.1
2629 Female, age 94, right hemisphere 52.1
2199 Male, age 80, right hemisphere 51.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.9
Samples: 246

Max nTPM: 111.0
Min nTPM: 29.9
Std nTPM: 9.7
Median nTPM: 51.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 111.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 92.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 86.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 86.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 83.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 82.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 80.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 79.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 76.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 75.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 75.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.8
Samples: 246

Max nTPM: 110.0
Min nTPM: 33.7
Std nTPM: 10.3
Median nTPM: 57.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 110.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 97.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 97.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 91.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 89.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 89.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 88.8
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 86.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 84.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 83.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 82.8
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Brain - Putamen (basal ganglia)
Average nTPM: 57.8
Samples: 205

Max nTPM: 108.4
Min nTPM: 41.9
Std nTPM: 9.3
Median nTPM: 55.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 108.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 92.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 85.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 80.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 80.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 79.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 78.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 78.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 77.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 76.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 74.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 189.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 120.3
FF:10164-103B2 76 years, female 120.3
Globus pallidus
Scaled Tags Per Million: 189.1
FF:10175-103C4 60 years, female 236.0
FF:10161-103A8 76 years, female 142.3
Nucleus accumbens
Scaled Tags Per Million: 89.5
FF:10037-101F1 23-56 years, mixed 89.5
Putamen
Scaled Tags Per Million: 138.8
FF:10176-103C5 60 years, female 138.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.4
Pig sample Sample description nTPM
Caudate
nTPM: 32.6
Samples: 4

Max nTPM: 37.0
Min nTPM: 26.1
Sample A Female 37.0
Sample B Female 26.1
Sample C Male 34.3
Sample D Male 32.8
Putamen
nTPM: 37.6
Samples: 4

Max nTPM: 44.6
Min nTPM: 29.8
Sample A Female 40.3
Sample B Female 29.8
Sample C Male 44.6
Sample D Male 35.6
Septum
nTPM: 41.4
Samples: 4

Max nTPM: 47.6
Min nTPM: 35.2
Sample A Female 47.6
Sample B Female 36.9
Sample C Male 45.8
Sample D Male 35.2
Ventral pallidum
nTPM: 36.7
Samples: 4

Max nTPM: 40.3
Min nTPM: 32.5
Sample A Female 40.3
Sample B Female 34.9
Sample C Male 39.0
Sample D Male 32.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.