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CBX3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA:61.0 nTPM
GTEx:74.1 nTPM
FANTOM5:176.7 Scaled Tags Per Million
Pig:47.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.4
2019 Male, age 18, unknown 59.9
1870 Female, age 42, unknown 57.2
2411 Female, age 72, unknown 57.2
1827 Male, age 72, unknown 55.1
1830 Male, age 51, unknown 55.0
1833 Male, age 53, unknown 54.8
2828 Female, age 72, unknown 54.1
2666 Male, age 74, left hemisphere 54.0
2219 Male, age 76, both hemispheres 53.8
2586 Male, age 75, left hemisphere 52.4
Dorsal raphe nucleus
nTPM: 56.5
2750 Male, age 76, both hemispheres 57.5
2047 Male, age 72, unknown 57.4
2298 Female, age 72, unknown 57.0
1828 Male, age 53, unknown 56.9
2016 Female, age 72, unknown 53.6
Inferior colliculus
nTPM: 55.4
2097 Female, age 72, unknown 58.6
1890 Male, age 53, unknown 55.9
1848 Female, age 42, unknown 54.7
2849 Male, age 72, unknown 52.5
Median raphe nucleus
nTPM: 61.0
2220 Male, age 76, midline 61.0
Pedunculopontine tegmental nucleus
nTPM: 57.0
2334 Male, age 80, both hemispheres 59.4
2338 Male, age 61, both hemispheres 56.1
1921 Female, age 85, both hemispheres 55.6
Periaquaductal grey, anterior
nTPM: 55.2
2502 Female, age 75, unknown 57.8
1947 Male, age 18, unknown 55.5
1795 Male, age 51, unknown 52.4
Periaquaductal grey, dorsal
nTPM: 54.4
2850 Male, age 76, both hemispheres 55.5
1831 Male, age 72, unknown 55.1
2464 Female, age 72, unknown 54.8
1840 Male, age 53, unknown 52.2
Periaquaductal grey, lateral
nTPM: 53.9
2272 Male, age 74, both hemispheres 55.7
2140 Male, age 76, both hemispheres 54.0
2053 Male, age 18, unknown 51.9
Pretectal area
nTPM: 56.0
1816 Male, age 51, unknown 59.5
1944 Female, age 72, unknown 58.8
1817 Female, age 42, unknown 58.6
1815 Male, age 53, unknown 57.3
2007 Male, age 72, unknown 56.9
2273 Male, age 74, both hemispheres 56.7
2316 Male, age 76, right hemisphere 55.7
2224 Female, age 72, unknown 54.5
2825 Male, age 18, unknown 53.2
2407 Male, age 75, both hemispheres 52.8
2667 Female, age 75, unknown 52.5
Red nucleus
nTPM: 58.1
1954 Female, age 42, unknown 61.3
2503 Female, age 72, unknown 60.4
1821 Female, age 72, unknown 59.8
2785 Male, age 18, unknown 58.7
2725 Female, age 75, unknown 58.3
1904 Male, age 53, unknown 57.9
2227 Male, age 72, unknown 57.8
1865 Male, age 51, unknown 57.7
2769 Male, age 72, unknown 57.5
2823 Male, age 76, right hemisphere 57.3
2588 Male, age 74, left hemisphere 56.9
2584 Male, age 75, left hemisphere 53.3
Substantia nigra
nTPM: 54.6
2241 Male, age 72, unknown 57.5
1889 Female, age 72, unknown 57.0
1941 Male, age 53, unknown 55.3
1851 Male, age 51, unknown 55.0
2590 Female, age 75, unknown 55.0
2665 Male, age 74, both hemispheres 54.4
2583 Male, age 75, right hemisphere 53.7
1916 Female, age 42, unknown 53.1
2699 Male, age 18, unknown 52.6
2409 Female, age 72, unknown 52.3
Superior colliculus
nTPM: 54.8
2087 Female, age 72, unknown 57.6
1913 Female, age 42, unknown 57.1
2261 Male, age 18, unknown 56.7
2587 Male, age 74, left hemisphere 55.3
2668 Female, age 75, unknown 55.1
1796 Male, age 53, unknown 53.7
1839 Male, age 51, unknown 53.6
1995 Male, age 72, unknown 53.3
1895 Male, age 76, right hemisphere 53.2
2664 Male, age 75, both hemispheres 52.8
Ventral tegmental area
nTPM: 56.1
2223 Female, age 72, unknown 57.7
1942 Male, age 51, unknown 57.0
2021 Male, age 53, unknown 57.0
1915 Female, age 42, unknown 55.3
2218 Male, age 76, both hemispheres 54.8
2410 Female, age 72, unknown 54.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.1
Samples: 139

Max nTPM: 127.4
Min nTPM: 53.4
Std nTPM: 13.1
Median nTPM: 73.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 127.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 114.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 112.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 104.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 102.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 99.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 98.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 98.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 94.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 94.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 94.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 176.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 176.7
FF:10158-103A5 76 years, female 176.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.5
Pig sample Sample description nTPM
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 53.5
Min nTPM: 40.5
Sample A Female 46.9
Sample B Female 40.5
Sample C Male 53.5
Sample D Male 49.2
Periaqueductal gray
nTPM: 37.9
Samples: 3

Max nTPM: 40.9
Min nTPM: 32.6
Sample B Female 32.6
Sample C Male 40.1
Sample D Male 40.9
Substantia nigra
nTPM: 41.1
Samples: 4

Max nTPM: 48.0
Min nTPM: 35.4
Sample A Female 48.0
Sample B Female 38.2
Sample C Male 42.7
Sample D Male 35.4
Superior colliculi
nTPM: 46.8
Samples: 4

Max nTPM: 52.1
Min nTPM: 38.5
Sample A Female 49.1
Sample B Female 38.5
Sample C Male 52.1
Sample D Male 47.5

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The Human Protein Atlas project is funded
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