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CCZ1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:10.9 nTPM
HPA:10.9 nTPM
GTEx:29.5 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Mouse:32.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045114Antibody HPA050006
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.6
2846 Female, age 79, unknown 11.8
2288 Male, age 75, left hemisphere 11.3
1854 Male, age 80, left hemisphere 11.0
2481 Female, age 94, left hemisphere 10.8
1781 Male, age 74, unknown 10.1
2290 Female, age 72, unknown 10.0
1857 Female, age 85, left hemisphere 9.8
2289 Male, age 61, right hemisphere 9.8
Claustrum
nTPM: 9.9
2491 Male, age 75, both hemispheres 10.5
2292 Female, age 85, both hemispheres 10.2
2392 Female, age 94, both hemispheres 10.2
1956 Male, age 74, unknown 10.1
2198 Male, age 80, both hemispheres 10.1
2568 Male, age 61, both hemispheres 10.1
2645 Female, age 72, unknown 10.0
2284 Female, age 91, both hemispheres 9.5
2196 Female, age 79, unknown 8.5
Globus pallidus, externus
nTPM: 10.8
1996 Male, age 80, right hemisphere 11.5
2772 Female, age 79, unknown 11.2
2567 Female, age 72, unknown 10.8
2395 Male, age 75, both hemispheres 10.2
2646 Male, age 61, right hemisphere 9.9
Globus pallidus, internus
nTPM: 10.9
2566 Female, age 72, unknown 11.9
2287 Male, age 75, right hemisphere 11.2
2778 Female, age 91, both hemispheres 11.1
2483 Female, age 94, right hemisphere 10.8
2111 Female, age 85, right hemisphere 10.7
1818 Male, age 74, unknown 10.6
2037 Male, age 80, right hemisphere 9.9
Nucleus accumbens
nTPM: 10.9
2286 Male, age 75, left hemisphere 11.7
2391 Female, age 94, left hemisphere 11.6
1806 Female, age 85, left hemisphere 11.0
1856 Female, age 91, right hemisphere 10.9
1783 Male, age 74, unknown 10.8
2698 Female, age 72, unknown 10.6
2732 Male, age 80, right hemisphere 10.3
2824 Male, age 61, right hemisphere 10.0
Nucleus basalis of Meynert
nTPM: 10.5
2393 Male, age 80, right hemisphere 11.0
2569 Male, age 61, both hemispheres 10.4
2484 Female, age 94, left hemisphere 10.3
2821 Male, age 75, both hemispheres 10.3
Nucleus of the diagonal band
nTPM: 10.6
1812 Female, age 91, both hemispheres 11.1
1979 Male, age 74, unknown 10.8
2195 Female, age 85, both hemispheres 10.7
2775 Male, age 80, right hemisphere 10.5
2029 Male, age 61, right hemisphere 9.6
Olfactory tubercle
nTPM: 10.6
1846 Male, age 80, right hemisphere 11.1
2856 Male, age 75, right hemisphere 10.8
2487 Female, age 94, left hemisphere 10.4
1998 Female, age 91, both hemispheres 10.1
Putamen
nTPM: 10.5
1838 Male, age 80, right hemisphere 11.3
2466 Female, age 79, unknown 11.0
2482 Female, age 94, left hemisphere 11.0
1937 Female, age 91, right hemisphere 10.1
1829 Male, age 74, unknown 10.0
2489 Female, age 72, unknown 10.0
2647 Male, age 75, left hemisphere 9.9
Septal nuclei
nTPM: 10.5
2394 Male, age 61, left hemisphere 10.9
1960 Male, age 74, unknown 10.7
2629 Female, age 94, right hemisphere 10.5
2009 Female, age 91, both hemispheres 10.4
2031 Female, age 72, unknown 10.4
2059 Female, age 85, both hemispheres 10.3
2199 Male, age 80, right hemisphere 10.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.1
Samples: 246

Max nTPM: 50.9
Min nTPM: 10.7
Std nTPM: 5.9
Median nTPM: 26.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 49.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 41.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 40.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 40.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 40.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 40.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 39.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 39.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 39.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.9
Samples: 246

Max nTPM: 52.2
Min nTPM: 12.6
Std nTPM: 6.4
Median nTPM: 27.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 52.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 45.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 45.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 45.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 44.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 44.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 44.0
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 39.1
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 38.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 38.6
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 38.6
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Brain - Putamen (basal ganglia)
Average nTPM: 29.5
Samples: 205

Max nTPM: 53.7
Min nTPM: 13.0
Std nTPM: 6.5
Median nTPM: 29.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 47.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 45.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 43.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 43.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 42.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 41.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 41.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 41.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 41.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 40.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.2
FF:10164-103B2 76 years, female 6.2
Globus pallidus
Scaled Tags Per Million: 11.0
FF:10175-103C4 60 years, female 15.7
FF:10161-103A8 76 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 5.9
FF:10037-101F1 23-56 years, mixed 5.9
Putamen
Scaled Tags Per Million: 4.8
FF:10176-103C5 60 years, female 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 32.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.2
Samples: 4

Max nTPM: 34.0
Min nTPM: 31.0
Sample A Male 34.0
Sample B Male 32.5
Sample C Female 31.3
Sample D Female 31.0
Septum
nTPM: 28.8
Samples: 4

Max nTPM: 30.4
Min nTPM: 27.0
Sample A Male 27.0
Sample B Male 29.1
Sample C Female 30.4
Sample D Female 28.7
Ventral forebrain
nTPM: 31.5
Samples: 4

Max nTPM: 34.0
Min nTPM: 29.0
Sample A Male 34.0
Sample B Male 30.8
Sample C Female 32.3
Sample D Female 29.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70528270 Antisense, RP_050623_02_C02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
70528270 Antisense, RP_050623_02_C02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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