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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:10.7 nTPM
HPA:10.7 nTPM
GTEx:9.3 nTPM
FANTOM5:81.4 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:65.5 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019708
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.7
Sample id Sample description nTPM
Hippocampus
nTPM: 9.8
1898 Male, age 80, left hemisphere 10.6
1911 Female, age 85, right hemisphere 10.0
1855 Male, age 76, left hemisphere 9.6
2529 Female, age 94, left hemisphere 9.6
2621 Female, age 67, right hemisphere 9.6
2148 Female, age 91, left hemisphere 9.5
Dentate gyrus
nTPM: 10.0
2010 Male, age 76, both hemispheres 10.6
2528 Male, age 74, both hemispheres 10.6
1927 Female, age 91, both hemispheres 10.0
2530 Female, age 94, left hemisphere 10.0
2246 Female, age 85, both hemispheres 9.6
2531 Female, age 67, both hemispheres 9.2
Entorhinal gyrus
nTPM: 10.2
2117 Female, age 91, right hemisphere 11.1
1938 Female, age 85, left hemisphere 10.7
2764 Male, age 80, right hemisphere 10.6
1787 Male, age 76, left hemisphere 9.8
2613 Female, age 94, left hemisphere 9.5
2686 Male, age 75, right hemisphere 9.5
Hippocampus, CA1
nTPM: 10.4
2749 Male, age 80, left hemisphere 11.5
1873 Female, age 85, both hemispheres 11.0
2527 Male, age 74, both hemispheres 10.1
2082 Female, age 91, right hemisphere 10.0
2045 Male, age 76, both hemispheres 9.3
Hippocampus, CA2
nTPM: 10.1
1963 Male, age 80, left hemisphere 10.6
2249 Male, age 74, both hemispheres 10.5
2113 Female, age 91, right hemisphere 10.2
1892 Male, age 76, both hemispheres 10.1
1940 Female, age 85, left hemisphere 10.0
2437 Female, age 94, left hemisphere 9.1
Hippocampus, CA3
nTPM: 10.0
1891 Female, age 85, both hemispheres 11.0
2137 Male, age 80, left hemisphere 10.8
2620 Female, age 94, left hemisphere 10.1
1867 Male, age 76, both hemispheres 9.9
2436 Male, age 74, both hemispheres 9.3
2861 Female, age 67, both hemispheres 8.7
Parahippocampal cortex
nTPM: 10.2
1850 Male, age 80, both hemispheres 11.2
1990 Female, age 91, right hemisphere 10.6
2250 Female, age 67, right hemisphere 10.5
1933 Female, age 85, both hemispheres 10.4
2532 Female, age 72, left hemisphere 10.1
2693 Female, age 94, both hemispheres 10.1
2018 Male, age 76, both hemispheres 10.0
2692 Male, age 74, both hemispheres 10.0
2245 Female, age 91, both hemispheres 9.7
2622 Female, age 67, right hemisphere 9.1
Perirhinal gyrus
nTPM: 10.7
1841 Female, age 85, right hemisphere 11.6
2848 Male, age 76, right hemisphere 11.0
1794 Male, age 80, right hemisphere 10.7
1847 Female, age 91, left hemisphere 10.1
2521 Female, age 94, right hemisphere 10.0
Subiculum
nTPM: 10.4
1977 Female, age 85, both hemispheres 11.0
1901 Male, age 80, both hemispheres 10.7
2042 Male, age 76, both hemispheres 10.6
2729 Female, age 91, right hemisphere 10.5
2619 Male, age 74, both hemispheres 10.3
2438 Female, age 94, left hemisphere 9.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.3
Samples: 197

Max nTPM: 14.4
Min nTPM: 6.5
Std nTPM: 1.1
Median nTPM: 9.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 14.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 13.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 12.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 12.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 11.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 11.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 11.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 11.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 11.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 11.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 11.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 81.4
FF:10169-103B7 60 years, female 97.3
FF:10153-102I9 76 years, female 65.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 12.4
Samples: 4

Max nTPM: 13.7
Min nTPM: 10.5
Sample A Female 13.7
Sample B Female 12.2
Sample C Male 13.0
Sample D Male 10.5
Entorhinal cortex
nTPM: 10.7
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.8
Sample A Female 9.9
Sample B Female 12.6
Sample C Male 10.3
Sample D Male 9.8
Subiculum
nTPM: 11.0
Samples: 4

Max nTPM: 11.5
Min nTPM: 10.4
Sample A Female 11.5
Sample B Female 11.5
Sample C Male 10.5
Sample D Male 10.4
Ventral hippocampus
nTPM: 11.2
Samples: 4

Max nTPM: 11.4
Min nTPM: 10.9
Sample A Female 11.4
Sample B Female 11.1
Sample C Male 10.9
Sample D Male 11.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 58.5
Sample A Male 59.8
Sample B Male 59.2
Sample C Female 61.8
Sample D Female 58.5
Hippocampal formation
nTPM: 65.5
Samples: 4

Max nTPM: 73.3
Min nTPM: 61.7
Sample A Male 73.3
Sample B Male 63.2
Sample C Female 63.7
Sample D Female 61.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
69838604 Antisense, RP_050310_02_B12, Mouse strain C57BL/6J (56 days, male) 4.9
74819686 Antisense, RP_060315_02_H02, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.