ABOUTMENU
HELP
NEWS
NLN
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:3.7 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:17.0 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031862
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.3
2846 Female, age 79, unknown 4.1
1854 Male, age 80, left hemisphere 3.8
2290 Female, age 72, unknown 3.4
2288 Male, age 75, left hemisphere 3.3
2481 Female, age 94, left hemisphere 3.3
1781 Male, age 74, unknown 3.0
1857 Female, age 85, left hemisphere 3.0
2289 Male, age 61, right hemisphere 3.0
Claustrum
nTPM: 3.6
2491 Male, age 75, both hemispheres 4.2
2198 Male, age 80, both hemispheres 3.9
1956 Male, age 74, unknown 3.8
2284 Female, age 91, both hemispheres 3.7
2568 Male, age 61, both hemispheres 3.7
2392 Female, age 94, both hemispheres 3.6
2292 Female, age 85, both hemispheres 3.5
2645 Female, age 72, unknown 3.2
2196 Female, age 79, unknown 3.1
Globus pallidus, externus
nTPM: 3.2
1996 Male, age 80, right hemisphere 3.7
2395 Male, age 75, both hemispheres 3.7
2772 Female, age 79, unknown 3.6
2567 Female, age 72, unknown 2.6
2646 Male, age 61, right hemisphere 2.4
Globus pallidus, internus
nTPM: 3.9
2287 Male, age 75, right hemisphere 5.6
2111 Female, age 85, right hemisphere 4.2
2037 Male, age 80, right hemisphere 4.1
2778 Female, age 91, both hemispheres 3.8
1818 Male, age 74, unknown 3.2
2566 Female, age 72, unknown 3.2
2483 Female, age 94, right hemisphere 3.0
Nucleus accumbens
nTPM: 2.9
2824 Male, age 61, right hemisphere 3.4
2286 Male, age 75, left hemisphere 3.2
1856 Female, age 91, right hemisphere 3.1
1806 Female, age 85, left hemisphere 3.0
2391 Female, age 94, left hemisphere 2.8
2698 Female, age 72, unknown 2.8
1783 Male, age 74, unknown 2.7
2732 Male, age 80, right hemisphere 2.4
Nucleus basalis of Meynert
nTPM: 3.0
2393 Male, age 80, right hemisphere 3.7
2821 Male, age 75, both hemispheres 3.1
2484 Female, age 94, left hemisphere 3.0
2569 Male, age 61, both hemispheres 2.3
Nucleus of the diagonal band
nTPM: 3.8
2029 Male, age 61, right hemisphere 4.9
1812 Female, age 91, both hemispheres 4.0
2775 Male, age 80, right hemisphere 3.7
2195 Female, age 85, both hemispheres 3.2
1979 Male, age 74, unknown 3.1
Olfactory tubercle
nTPM: 3.9
1846 Male, age 80, right hemisphere 4.1
2487 Female, age 94, left hemisphere 4.1
1998 Female, age 91, both hemispheres 3.8
2856 Male, age 75, right hemisphere 3.6
Putamen
nTPM: 3.3
1829 Male, age 74, unknown 4.0
2466 Female, age 79, unknown 3.7
1838 Male, age 80, right hemisphere 3.4
2482 Female, age 94, left hemisphere 3.4
1937 Female, age 91, right hemisphere 3.3
2489 Female, age 72, unknown 2.9
2647 Male, age 75, left hemisphere 2.7
Septal nuclei
nTPM: 3.3
2629 Female, age 94, right hemisphere 4.0
2031 Female, age 72, unknown 3.8
2009 Female, age 91, both hemispheres 3.6
1960 Male, age 74, unknown 3.3
2199 Male, age 80, right hemisphere 3.2
2394 Male, age 61, left hemisphere 2.8
2059 Female, age 85, both hemispheres 2.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.7
Samples: 246

Max nTPM: 7.2
Min nTPM: 1.8
Std nTPM: 0.6
Median nTPM: 3.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 7.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 6.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 5.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 5.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 5.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 5.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 5.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 5.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 5.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 5.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 5.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.1
Samples: 246

Max nTPM: 6.5
Min nTPM: 1.2
Std nTPM: 0.6
Median nTPM: 3.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 6.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 5.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 4.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 4.7
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 4.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 4.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 4.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 4.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 4.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 4.3
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 4.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 3.6
Samples: 205

Max nTPM: 6.3
Min nTPM: 1.9
Std nTPM: 0.6
Median nTPM: 3.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 6.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 5.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 5.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 5.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 5.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 5.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 5.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 5.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 4.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 4.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.5
FF:10164-103B2 76 years, female 15.5
Globus pallidus
Scaled Tags Per Million: 19.0
FF:10175-103C4 60 years, female 22.8
FF:10161-103A8 76 years, female 15.1
Nucleus accumbens
Scaled Tags Per Million: 20.5
FF:10037-101F1 23-56 years, mixed 20.5
Putamen
Scaled Tags Per Million: 24.0
FF:10176-103C5 60 years, female 24.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Caudate
nTPM: 14.7
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.9
Sample A Female 15.6
Sample B Female 12.9
Sample C Male 14.6
Sample D Male 15.6
Putamen
nTPM: 16.5
Samples: 4

Max nTPM: 18.7
Min nTPM: 15.1
Sample A Female 15.7
Sample B Female 15.1
Sample C Male 18.7
Sample D Male 16.5
Septum
nTPM: 14.0
Samples: 4

Max nTPM: 15.2
Min nTPM: 12.9
Sample A Female 14.5
Sample B Female 13.4
Sample C Male 12.9
Sample D Male 15.2
Ventral pallidum
nTPM: 15.5
Samples: 4

Max nTPM: 16.6
Min nTPM: 13.6
Sample A Female 15.3
Sample B Female 13.6
Sample C Male 16.4
Sample D Male 16.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.0
Samples: 4

Max nTPM: 18.4
Min nTPM: 16.1
Sample A Male 16.1
Sample B Male 16.8
Sample C Female 16.8
Sample D Female 18.4
Septum
nTPM: 16.3
Samples: 4

Max nTPM: 17.7
Min nTPM: 15.4
Sample A Male 15.4
Sample B Male 15.5
Sample C Female 16.4
Sample D Female 17.7
Ventral forebrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.4
Sample A Male 15.4
Sample B Male 16.3
Sample C Female 17.1
Sample D Female 16.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
638735 Antisense, RP_040831_02_F03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
638735 Antisense, RP_040831_02_F03, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.