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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:50.7 nTPM
FANTOM5:212.3 Scaled Tags Per Million
Pig:71.1 nTPM
Mouse:121.3 nTPM
Allen mouse:6.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029281Antibody HPA029282
Glial cells LowLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Hippocampus
nTPM: 32.9
1898 Male, age 80, left hemisphere 36.5
2621 Female, age 67, right hemisphere 34.2
1911 Female, age 85, right hemisphere 33.8
2529 Female, age 94, left hemisphere 32.3
1855 Male, age 76, left hemisphere 30.6
2148 Female, age 91, left hemisphere 30.1
Dentate gyrus
nTPM: 35.1
2010 Male, age 76, both hemispheres 38.7
2530 Female, age 94, left hemisphere 36.3
1927 Female, age 91, both hemispheres 35.6
2246 Female, age 85, both hemispheres 34.2
2528 Male, age 74, both hemispheres 33.3
2531 Female, age 67, both hemispheres 32.3
Entorhinal gyrus
nTPM: 33.2
2117 Female, age 91, right hemisphere 38.0
2764 Male, age 80, right hemisphere 34.2
1938 Female, age 85, left hemisphere 34.1
1787 Male, age 76, left hemisphere 33.4
2686 Male, age 75, right hemisphere 30.1
2613 Female, age 94, left hemisphere 29.4
Hippocampus, CA1
nTPM: 35.0
2749 Male, age 80, left hemisphere 41.4
1873 Female, age 85, both hemispheres 35.2
2527 Male, age 74, both hemispheres 33.3
2045 Male, age 76, both hemispheres 32.8
2082 Female, age 91, right hemisphere 32.5
Hippocampus, CA2
nTPM: 35.3
1963 Male, age 80, left hemisphere 38.7
1892 Male, age 76, both hemispheres 36.4
2249 Male, age 74, both hemispheres 35.6
2437 Female, age 94, left hemisphere 34.7
1940 Female, age 85, left hemisphere 33.4
2113 Female, age 91, right hemisphere 33.3
Hippocampus, CA3
nTPM: 34.5
1867 Male, age 76, both hemispheres 42.0
1891 Female, age 85, both hemispheres 40.3
2137 Male, age 80, left hemisphere 39.0
2436 Male, age 74, both hemispheres 30.4
2620 Female, age 94, left hemisphere 28.8
2861 Female, age 67, both hemispheres 26.3
Parahippocampal cortex
nTPM: 32.6
2018 Male, age 76, both hemispheres 37.5
1990 Female, age 91, right hemisphere 35.9
1850 Male, age 80, both hemispheres 34.3
2245 Female, age 91, both hemispheres 33.6
1933 Female, age 85, both hemispheres 33.0
2693 Female, age 94, both hemispheres 33.0
2692 Male, age 74, both hemispheres 32.8
2250 Female, age 67, right hemisphere 31.7
2532 Female, age 72, left hemisphere 31.2
2622 Female, age 67, right hemisphere 22.7
Perirhinal gyrus
nTPM: 35.0
2521 Female, age 94, right hemisphere 37.5
1841 Female, age 85, right hemisphere 35.6
1794 Male, age 80, right hemisphere 35.4
1847 Female, age 91, left hemisphere 33.4
2848 Male, age 76, right hemisphere 32.9
Subiculum
nTPM: 37.5
2042 Male, age 76, both hemispheres 43.7
1977 Female, age 85, both hemispheres 40.3
2438 Female, age 94, left hemisphere 40.0
1901 Male, age 80, both hemispheres 39.2
2619 Male, age 74, both hemispheres 31.6
2729 Female, age 91, right hemisphere 30.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 50.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.7
Samples: 197

Max nTPM: 129.2
Min nTPM: 20.8
Std nTPM: 15.9
Median nTPM: 47.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 129.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 109.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 107.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 99.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 92.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 91.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 89.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 85.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 84.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 84.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 83.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 212.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 212.3
FF:10153-102I9 76 years, female 236.3
FF:10169-103B7 60 years, female 188.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 71.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 71.1
Samples: 4

Max nTPM: 82.2
Min nTPM: 53.8
Sample A Female 82.2
Sample B Female 70.6
Sample C Male 77.7
Sample D Male 53.8
Entorhinal cortex
nTPM: 60.5
Samples: 4

Max nTPM: 72.1
Min nTPM: 53.5
Sample A Female 60.6
Sample B Female 72.1
Sample C Male 55.6
Sample D Male 53.5
Subiculum
nTPM: 52.5
Samples: 4

Max nTPM: 64.2
Min nTPM: 45.7
Sample A Female 64.2
Sample B Female 48.5
Sample C Male 45.7
Sample D Male 51.6
Ventral hippocampus
nTPM: 54.3
Samples: 4

Max nTPM: 66.9
Min nTPM: 43.4
Sample A Female 59.3
Sample B Female 43.4
Sample C Male 47.4
Sample D Male 66.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 121.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 113.4
Samples: 4

Max nTPM: 119.1
Min nTPM: 104.2
Sample A Male 118.8
Sample B Male 119.1
Sample C Female 111.4
Sample D Female 104.2
Hippocampal formation
nTPM: 121.3
Samples: 4

Max nTPM: 128.8
Min nTPM: 112.8
Sample A Male 128.8
Sample B Male 123.3
Sample C Female 120.3
Sample D Female 112.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
70230927 Antisense, RP_050524_04_G11, Mouse strain C57BL/6J (56 days, male) 7.1
75826627 Antisense, RP_060601_01_C04, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.