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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:14.7 nTPM
HPA:14.7 nTPM
GTEx:13.5 nTPM
FANTOM5:62.0 Scaled Tags Per Million
Pig:5.3 nTPM
Mouse:8.1 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046560
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Hippocampus
nTPM: 12.7
1898 Male, age 80, left hemisphere 16.0
2529 Female, age 94, left hemisphere 12.2
2148 Female, age 91, left hemisphere 12.1
1911 Female, age 85, right hemisphere 12.0
1855 Male, age 76, left hemisphere 11.9
2621 Female, age 67, right hemisphere 11.9
Dentate gyrus
nTPM: 12.2
1927 Female, age 91, both hemispheres 15.3
2010 Male, age 76, both hemispheres 12.1
2246 Female, age 85, both hemispheres 12.1
2528 Male, age 74, both hemispheres 11.6
2530 Female, age 94, left hemisphere 11.2
2531 Female, age 67, both hemispheres 11.1
Entorhinal gyrus
nTPM: 12.0
1938 Female, age 85, left hemisphere 13.8
1787 Male, age 76, left hemisphere 12.5
2764 Male, age 80, right hemisphere 12.1
2117 Female, age 91, right hemisphere 11.6
2686 Male, age 75, right hemisphere 11.4
2613 Female, age 94, left hemisphere 10.6
Hippocampus, CA1
nTPM: 14.0
2749 Male, age 80, left hemisphere 20.7
2527 Male, age 74, both hemispheres 14.0
1873 Female, age 85, both hemispheres 13.3
2082 Female, age 91, right hemisphere 11.2
2045 Male, age 76, both hemispheres 10.7
Hippocampus, CA2
nTPM: 13.1
1892 Male, age 76, both hemispheres 17.4
1963 Male, age 80, left hemisphere 14.2
2249 Male, age 74, both hemispheres 12.6
2113 Female, age 91, right hemisphere 11.9
2437 Female, age 94, left hemisphere 11.9
1940 Female, age 85, left hemisphere 10.9
Hippocampus, CA3
nTPM: 13.7
2137 Male, age 80, left hemisphere 19.0
1867 Male, age 76, both hemispheres 14.7
2436 Male, age 74, both hemispheres 13.5
1891 Female, age 85, both hemispheres 12.9
2620 Female, age 94, left hemisphere 11.7
2861 Female, age 67, both hemispheres 10.4
Parahippocampal cortex
nTPM: 13.2
1850 Male, age 80, both hemispheres 16.1
1990 Female, age 91, right hemisphere 14.0
2245 Female, age 91, both hemispheres 13.9
2250 Female, age 67, right hemisphere 13.9
2693 Female, age 94, both hemispheres 13.8
1933 Female, age 85, both hemispheres 12.8
2532 Female, age 72, left hemisphere 12.6
2692 Male, age 74, both hemispheres 12.4
2622 Female, age 67, right hemisphere 11.4
2018 Male, age 76, both hemispheres 10.9
Perirhinal gyrus
nTPM: 14.7
1847 Female, age 91, left hemisphere 16.0
1841 Female, age 85, right hemisphere 15.0
1794 Male, age 80, right hemisphere 14.7
2521 Female, age 94, right hemisphere 13.9
2848 Male, age 76, right hemisphere 13.9
Subiculum
nTPM: 12.7
1901 Male, age 80, both hemispheres 16.2
2438 Female, age 94, left hemisphere 13.2
1977 Female, age 85, both hemispheres 12.1
2619 Male, age 74, both hemispheres 11.6
2729 Female, age 91, right hemisphere 11.5
2042 Male, age 76, both hemispheres 11.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.5
Samples: 197

Max nTPM: 43.4
Min nTPM: 3.7
Std nTPM: 7.2
Median nTPM: 11.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 43.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 35.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 34.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 32.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 32.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 31.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 31.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 30.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 29.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 29.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 29.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.0
FF:10169-103B7 60 years, female 88.9
FF:10153-102I9 76 years, female 35.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.6
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.8
Sample A Female 4.3
Sample B Female 5.2
Sample C Male 5.0
Sample D Male 3.8
Entorhinal cortex
nTPM: 5.3
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.5
Sample A Female 5.3
Sample B Female 5.8
Sample C Male 4.5
Sample D Male 5.6
Subiculum
nTPM: 4.3
Samples: 4

Max nTPM: 4.4
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.4
Sample C Male 4.2
Sample D Male 4.4
Ventral hippocampus
nTPM: 4.3
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.6
Sample A Female 4.4
Sample B Female 4.8
Sample C Male 3.6
Sample D Male 4.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.9
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.5
Sample A Male 5.5
Sample B Male 5.8
Sample C Female 6.4
Sample D Female 5.7
Hippocampal formation
nTPM: 8.1
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.0
Sample A Male 7.0
Sample B Male 7.9
Sample C Female 9.9
Sample D Female 7.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
68523306 Antisense, RP_050118_02_E04, Mouse strain C57BL/6J (56 days, male) 1.1

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