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MXD4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.8 nTPM
HPA:39.8 nTPM
GTEx:35.2 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:48.1 nTPM
Allen mouse:4.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.6
2289 Male, age 61, right hemisphere 38.6
1781 Male, age 74, unknown 37.9
2290 Female, age 72, unknown 37.9
2481 Female, age 94, left hemisphere 36.5
1857 Female, age 85, left hemisphere 36.4
2846 Female, age 79, unknown 35.4
2288 Male, age 75, left hemisphere 35.2
1854 Male, age 80, left hemisphere 34.9
Claustrum
nTPM: 37.8
2645 Female, age 72, unknown 39.6
2568 Male, age 61, both hemispheres 39.4
2491 Male, age 75, both hemispheres 38.7
2284 Female, age 91, both hemispheres 38.5
2196 Female, age 79, unknown 38.0
2292 Female, age 85, both hemispheres 37.3
1956 Male, age 74, unknown 36.8
2198 Male, age 80, both hemispheres 36.7
2392 Female, age 94, both hemispheres 35.1
Globus pallidus, externus
nTPM: 39.8
2646 Male, age 61, right hemisphere 46.8
2567 Female, age 72, unknown 42.7
2772 Female, age 79, unknown 37.3
1996 Male, age 80, right hemisphere 36.9
2395 Male, age 75, both hemispheres 35.1
Globus pallidus, internus
nTPM: 37.5
2483 Female, age 94, right hemisphere 40.4
2566 Female, age 72, unknown 39.9
2111 Female, age 85, right hemisphere 37.5
2778 Female, age 91, both hemispheres 37.1
1818 Male, age 74, unknown 36.6
2037 Male, age 80, right hemisphere 35.8
2287 Male, age 75, right hemisphere 35.4
Nucleus accumbens
nTPM: 36.4
1783 Male, age 74, unknown 38.8
2732 Male, age 80, right hemisphere 37.5
1806 Female, age 85, left hemisphere 36.9
2824 Male, age 61, right hemisphere 36.5
2391 Female, age 94, left hemisphere 35.7
2286 Male, age 75, left hemisphere 35.6
2698 Female, age 72, unknown 35.1
1856 Female, age 91, right hemisphere 34.7
Nucleus basalis of Meynert
nTPM: 38.5
2569 Male, age 61, both hemispheres 47.2
2484 Female, age 94, left hemisphere 39.8
2821 Male, age 75, both hemispheres 33.8
2393 Male, age 80, right hemisphere 33.1
Nucleus of the diagonal band
nTPM: 38.2
1979 Male, age 74, unknown 39.5
2029 Male, age 61, right hemisphere 39.5
2195 Female, age 85, both hemispheres 38.5
2775 Male, age 80, right hemisphere 38.4
1812 Female, age 91, both hemispheres 35.2
Olfactory tubercle
nTPM: 37.8
2487 Female, age 94, left hemisphere 38.4
2856 Male, age 75, right hemisphere 38.3
1846 Male, age 80, right hemisphere 38.0
1998 Female, age 91, both hemispheres 36.4
Putamen
nTPM: 36.9
2647 Male, age 75, left hemisphere 43.4
2489 Female, age 72, unknown 39.6
2482 Female, age 94, left hemisphere 37.0
2466 Female, age 79, unknown 35.7
1829 Male, age 74, unknown 34.7
1937 Female, age 91, right hemisphere 34.5
1838 Male, age 80, right hemisphere 33.7
Septal nuclei
nTPM: 38.2
2059 Female, age 85, both hemispheres 43.1
1960 Male, age 74, unknown 39.1
2394 Male, age 61, left hemisphere 38.7
2199 Male, age 80, right hemisphere 38.3
2031 Female, age 72, unknown 38.0
2009 Female, age 91, both hemispheres 35.7
2629 Female, age 94, right hemisphere 34.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.4
Samples: 246

Max nTPM: 75.6
Min nTPM: 9.8
Std nTPM: 9.6
Median nTPM: 29.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 75.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 72.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 61.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 61.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 59.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 53.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 52.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 52.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 52.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 48.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 48.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.2
Samples: 246

Max nTPM: 99.3
Min nTPM: 10.1
Std nTPM: 14.5
Median nTPM: 31.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 99.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 92.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 91.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 87.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 87.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 86.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 74.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 71.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 68.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 66.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 66.7
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Brain - Putamen (basal ganglia)
Average nTPM: 30.3
Samples: 205

Max nTPM: 60.4
Min nTPM: 12.9
Std nTPM: 9.5
Median nTPM: 27.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 60.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 59.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 57.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 57.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 54.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 52.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 50.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 50.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 49.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 49.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 49.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.7
FF:10164-103B2 76 years, female 43.7
Globus pallidus
Scaled Tags Per Million: 32.2
FF:10161-103A8 76 years, female 36.1
FF:10175-103C4 60 years, female 28.4
Nucleus accumbens
Scaled Tags Per Million: 40.3
FF:10037-101F1 23-56 years, mixed 40.3
Putamen
Scaled Tags Per Million: 33.7
FF:10176-103C5 60 years, female 33.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Caudate
nTPM: 12.3
Samples: 4

Max nTPM: 14.2
Min nTPM: 9.4
Sample A Female 9.4
Sample B Female 13.5
Sample C Male 14.2
Sample D Male 12.0
Putamen
nTPM: 12.5
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.4
Sample A Female 11.8
Sample B Female 11.4
Sample C Male 12.3
Sample D Male 14.5
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 11.4
Min nTPM: 10.5
Sample A Female 11.0
Sample B Female 11.4
Sample C Male 10.5
Sample D Male 10.6
Ventral pallidum
nTPM: 10.9
Samples: 4

Max nTPM: 12.6
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 11.8
Sample C Male 12.6
Sample D Male 10.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 48.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 48.1
Samples: 4

Max nTPM: 52.3
Min nTPM: 43.2
Sample A Male 43.2
Sample B Male 44.9
Sample C Female 52.0
Sample D Female 52.3
Septum
nTPM: 32.2
Samples: 4

Max nTPM: 35.3
Min nTPM: 28.3
Sample A Male 31.1
Sample B Male 28.3
Sample C Female 33.9
Sample D Female 35.3
Ventral forebrain
nTPM: 46.3
Samples: 4

Max nTPM: 49.9
Min nTPM: 40.8
Sample A Male 47.8
Sample B Male 40.8
Sample C Female 49.9
Sample D Female 46.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.9
67810541 Antisense, RP_040922_01_F10, Mouse strain C57BL/6J (56 days, male) 7.7
75694722 Antisense, RP_060518_03_H04, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 4.4
67810541 Antisense, RP_040922_01_F10, Mouse strain C57BL/6J (56 days, male) 7.7
75694722 Antisense, RP_060518_03_H04, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.