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MXD4
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA:40.9 nTPM
GTEx:31.2 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:47.5 nTPM
Allen mouse:8.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Hippocampus
nTPM: 39.6
2529 Female, age 94, left hemisphere 43.4
2148 Female, age 91, left hemisphere 40.7
2621 Female, age 67, right hemisphere 40.2
1855 Male, age 76, left hemisphere 39.0
1911 Female, age 85, right hemisphere 37.7
1898 Male, age 80, left hemisphere 36.6
Dentate gyrus
nTPM: 38.9
2531 Female, age 67, both hemispheres 43.7
2530 Female, age 94, left hemisphere 40.5
2528 Male, age 74, both hemispheres 38.3
1927 Female, age 91, both hemispheres 37.0
2010 Male, age 76, both hemispheres 36.9
2246 Female, age 85, both hemispheres 36.9
Entorhinal gyrus
nTPM: 40.9
2686 Male, age 75, right hemisphere 42.2
1787 Male, age 76, left hemisphere 42.0
2613 Female, age 94, left hemisphere 41.8
2117 Female, age 91, right hemisphere 40.4
2764 Male, age 80, right hemisphere 39.6
1938 Female, age 85, left hemisphere 39.3
Hippocampus, CA1
nTPM: 37.7
2527 Male, age 74, both hemispheres 39.6
2082 Female, age 91, right hemisphere 39.4
2045 Male, age 76, both hemispheres 39.3
1873 Female, age 85, both hemispheres 37.0
2749 Male, age 80, left hemisphere 33.1
Hippocampus, CA2
nTPM: 38.0
1963 Male, age 80, left hemisphere 43.1
2437 Female, age 94, left hemisphere 40.2
2113 Female, age 91, right hemisphere 39.4
1940 Female, age 85, left hemisphere 35.8
1892 Male, age 76, both hemispheres 34.7
2249 Male, age 74, both hemispheres 34.6
Hippocampus, CA3
nTPM: 39.1
2861 Female, age 67, both hemispheres 49.9
2620 Female, age 94, left hemisphere 43.4
2436 Male, age 74, both hemispheres 36.1
1891 Female, age 85, both hemispheres 36.0
1867 Male, age 76, both hemispheres 35.0
2137 Male, age 80, left hemisphere 34.4
Parahippocampal cortex
nTPM: 38.3
2622 Female, age 67, right hemisphere 42.9
2692 Male, age 74, both hemispheres 40.5
1933 Female, age 85, both hemispheres 38.7
2245 Female, age 91, both hemispheres 38.7
2018 Male, age 76, both hemispheres 37.8
2532 Female, age 72, left hemisphere 37.8
2693 Female, age 94, both hemispheres 37.0
1990 Female, age 91, right hemisphere 36.9
2250 Female, age 67, right hemisphere 36.8
1850 Male, age 80, both hemispheres 35.9
Perirhinal gyrus
nTPM: 37.8
1794 Male, age 80, right hemisphere 39.1
2521 Female, age 94, right hemisphere 38.2
2848 Male, age 76, right hemisphere 37.9
1841 Female, age 85, right hemisphere 37.1
1847 Female, age 91, left hemisphere 36.9
Subiculum
nTPM: 37.3
2619 Male, age 74, both hemispheres 41.0
2729 Female, age 91, right hemisphere 40.2
1977 Female, age 85, both hemispheres 37.9
2438 Female, age 94, left hemisphere 36.0
2042 Male, age 76, both hemispheres 34.9
1901 Male, age 80, both hemispheres 33.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.2
Samples: 197

Max nTPM: 78.8
Min nTPM: 11.4
Std nTPM: 10.2
Median nTPM: 29.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 78.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 71.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 58.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 57.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 55.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 54.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 53.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 52.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 50.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 49.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 49.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.9
FF:10153-102I9 76 years, female 54.5
FF:10169-103B7 60 years, female 31.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 11.1
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.9
Sample A Female 13.0
Sample B Female 11.2
Sample C Male 9.9
Sample D Male 10.4
Entorhinal cortex
nTPM: 13.6
Samples: 4

Max nTPM: 17.1
Min nTPM: 10.8
Sample A Female 13.7
Sample B Female 12.6
Sample C Male 17.1
Sample D Male 10.8
Subiculum
nTPM: 11.8
Samples: 4

Max nTPM: 16.0
Min nTPM: 9.8
Sample A Female 16.0
Sample B Female 10.3
Sample C Male 9.8
Sample D Male 11.1
Ventral hippocampus
nTPM: 12.1
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 10.8
Sample C Male 15.4
Sample D Male 11.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.5
Samples: 4

Max nTPM: 50.2
Min nTPM: 44.9
Sample A Male 46.0
Sample B Male 44.9
Sample C Female 50.2
Sample D Female 49.0
Hippocampal formation
nTPM: 45.3
Samples: 4

Max nTPM: 47.6
Min nTPM: 43.3
Sample A Male 43.8
Sample B Male 43.3
Sample C Female 47.6
Sample D Female 46.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.2
67810541 Antisense, RP_040922_01_F10, Mouse strain C57BL/6J (56 days, male) 12.8
75694722 Antisense, RP_060518_03_H04, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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