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SLC12A5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.5 nTPM
HPA:80.5 nTPM
GTEx:57.9 nTPM
FANTOM5:13.8 Scaled Tags Per Million
Pig:65.1 nTPM
Mouse:138.1 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.8
2219 Male, age 76, both hemispheres 69.0
1827 Male, age 72, unknown 68.2
1833 Male, age 53, unknown 55.8
2019 Male, age 18, unknown 54.3
2411 Female, age 72, unknown 54.0
2666 Male, age 74, left hemisphere 53.8
2828 Female, age 72, unknown 53.2
2586 Male, age 75, left hemisphere 51.5
1870 Female, age 42, unknown 50.1
1830 Male, age 51, unknown 48.0
Dorsal raphe nucleus
nTPM: 49.9
2298 Female, age 72, unknown 58.8
2047 Male, age 72, unknown 53.0
1828 Male, age 53, unknown 52.9
2750 Male, age 76, both hemispheres 45.2
2016 Female, age 72, unknown 39.8
Inferior colliculus
nTPM: 78.5
2097 Female, age 72, unknown 85.1
1848 Female, age 42, unknown 83.8
2849 Male, age 72, unknown 78.3
1890 Male, age 53, unknown 66.9
Median raphe nucleus
nTPM: 65.4
2220 Male, age 76, midline 65.4
Pedunculopontine tegmental nucleus
nTPM: 57.5
1921 Female, age 85, both hemispheres 75.4
2334 Male, age 80, both hemispheres 53.9
2338 Male, age 61, both hemispheres 43.3
Periaquaductal grey, anterior
nTPM: 80.5
2502 Female, age 75, unknown 127.3
1947 Male, age 18, unknown 58.0
1795 Male, age 51, unknown 56.4
Periaquaductal grey, dorsal
nTPM: 57.3
1840 Male, age 53, unknown 68.2
2464 Female, age 72, unknown 62.8
2850 Male, age 76, both hemispheres 51.7
1831 Male, age 72, unknown 46.4
Periaquaductal grey, lateral
nTPM: 51.4
2053 Male, age 18, unknown 56.4
2140 Male, age 76, both hemispheres 55.5
2272 Male, age 74, both hemispheres 42.2
Pretectal area
nTPM: 69.6
1816 Male, age 51, unknown 104.1
1817 Female, age 42, unknown 82.1
2007 Male, age 72, unknown 81.8
2667 Female, age 75, unknown 76.5
1944 Female, age 72, unknown 75.7
2825 Male, age 18, unknown 65.3
1815 Male, age 53, unknown 63.9
2316 Male, age 76, right hemisphere 61.9
2224 Female, age 72, unknown 56.8
2407 Male, age 75, both hemispheres 55.2
2273 Male, age 74, both hemispheres 42.0
Red nucleus
nTPM: 55.2
1954 Female, age 42, unknown 64.1
1821 Female, age 72, unknown 62.4
2503 Female, age 72, unknown 60.5
2769 Male, age 72, unknown 59.8
2227 Male, age 72, unknown 58.4
2823 Male, age 76, right hemisphere 57.7
2588 Male, age 74, left hemisphere 56.3
2785 Male, age 18, unknown 53.9
1904 Male, age 53, unknown 50.7
2584 Male, age 75, left hemisphere 49.9
1865 Male, age 51, unknown 49.5
2725 Female, age 75, unknown 40.0
Substantia nigra
nTPM: 46.8
1889 Female, age 72, unknown 66.6
2665 Male, age 74, both hemispheres 58.8
1916 Female, age 42, unknown 49.9
1941 Male, age 53, unknown 49.9
2241 Male, age 72, unknown 45.1
1851 Male, age 51, unknown 45.0
2590 Female, age 75, unknown 43.0
2699 Male, age 18, unknown 42.4
2409 Female, age 72, unknown 35.7
2583 Male, age 75, right hemisphere 31.5
Superior colliculus
nTPM: 65.0
1895 Male, age 76, right hemisphere 86.5
2261 Male, age 18, unknown 84.3
2087 Female, age 72, unknown 84.1
2664 Male, age 75, both hemispheres 77.6
1796 Male, age 53, unknown 66.9
1839 Male, age 51, unknown 64.8
2587 Male, age 74, left hemisphere 53.8
2668 Female, age 75, unknown 48.2
1913 Female, age 42, unknown 42.3
1995 Male, age 72, unknown 41.9
Ventral tegmental area
nTPM: 50.4
2218 Male, age 76, both hemispheres 60.6
1942 Male, age 51, unknown 54.2
2410 Female, age 72, unknown 51.7
1915 Female, age 42, unknown 50.5
2021 Male, age 53, unknown 44.1
2223 Female, age 72, unknown 41.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.9
Samples: 139

Max nTPM: 192.5
Min nTPM: 3.2
Std nTPM: 31.9
Median nTPM: 55.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 192.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 160.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 129.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 128.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 118.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 114.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 109.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 101.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 100.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 99.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 98.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.8
FF:10158-103A5 76 years, female 13.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.1
Pig sample Sample description nTPM
Midbrain
nTPM: 61.9
Samples: 4

Max nTPM: 108.8
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 27.4
Sample C Male 108.8
Sample D Male 99.0
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 46.5
Min nTPM: 30.4
Sample B Female 30.6
Sample C Male 46.5
Sample D Male 30.4
Substantia nigra
nTPM: 30.7
Samples: 4

Max nTPM: 50.3
Min nTPM: 11.0
Sample A Female 50.3
Sample B Female 20.6
Sample C Male 40.7
Sample D Male 11.0
Superior colliculi
nTPM: 65.1
Samples: 4

Max nTPM: 81.6
Min nTPM: 31.9
Sample A Female 77.1
Sample B Female 31.9
Sample C Male 69.9
Sample D Male 81.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 138.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 138.1
Samples: 4

Max nTPM: 152.1
Min nTPM: 118.8
Sample A Male 118.8
Sample B Male 137.2
Sample C Female 152.1
Sample D Female 144.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
72001898 Antisense, RP_050915_02_E04, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.