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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.8 nTPM
HPA:127.8 nTPM
GTEx:88.5 nTPM
FANTOM5:96.1 Scaled Tags Per Million
Pig:60.6 nTPM
Mouse:68.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.0
2586 Male, age 75, left hemisphere 151.1
2828 Female, age 72, unknown 129.9
1833 Male, age 53, unknown 102.7
1827 Male, age 72, unknown 101.2
2666 Male, age 74, left hemisphere 96.5
1830 Male, age 51, unknown 96.3
1870 Female, age 42, unknown 91.6
2411 Female, age 72, unknown 88.4
2019 Male, age 18, unknown 74.0
2219 Male, age 76, both hemispheres 58.8
Dorsal raphe nucleus
nTPM: 99.8
1828 Male, age 53, unknown 120.4
2016 Female, age 72, unknown 116.9
2047 Male, age 72, unknown 102.3
2298 Female, age 72, unknown 84.8
2750 Male, age 76, both hemispheres 74.7
Inferior colliculus
nTPM: 127.8
1848 Female, age 42, unknown 146.7
2849 Male, age 72, unknown 132.0
2097 Female, age 72, unknown 121.2
1890 Male, age 53, unknown 111.5
Median raphe nucleus
nTPM: 83.7
2220 Male, age 76, midline 83.7
Pedunculopontine tegmental nucleus
nTPM: 76.5
1921 Female, age 85, both hemispheres 81.0
2334 Male, age 80, both hemispheres 79.9
2338 Male, age 61, both hemispheres 68.4
Periaquaductal grey, anterior
nTPM: 103.3
2502 Female, age 75, unknown 112.2
1947 Male, age 18, unknown 108.4
1795 Male, age 51, unknown 89.4
Periaquaductal grey, dorsal
nTPM: 110.8
2850 Male, age 76, both hemispheres 122.2
2464 Female, age 72, unknown 121.2
1840 Male, age 53, unknown 113.2
1831 Male, age 72, unknown 86.8
Periaquaductal grey, lateral
nTPM: 105.8
2140 Male, age 76, both hemispheres 130.7
2053 Male, age 18, unknown 112.6
2272 Male, age 74, both hemispheres 74.1
Pretectal area
nTPM: 97.2
1817 Female, age 42, unknown 115.2
2825 Male, age 18, unknown 113.8
2316 Male, age 76, right hemisphere 106.3
2407 Male, age 75, both hemispheres 101.0
2667 Female, age 75, unknown 99.7
1944 Female, age 72, unknown 99.5
1816 Male, age 51, unknown 96.7
1815 Male, age 53, unknown 91.0
2273 Male, age 74, both hemispheres 84.7
2224 Female, age 72, unknown 83.8
2007 Male, age 72, unknown 77.1
Red nucleus
nTPM: 114.3
1954 Female, age 42, unknown 163.6
1821 Female, age 72, unknown 139.8
2503 Female, age 72, unknown 126.9
2227 Male, age 72, unknown 126.1
2769 Male, age 72, unknown 122.6
1904 Male, age 53, unknown 118.6
2588 Male, age 74, left hemisphere 113.6
1865 Male, age 51, unknown 110.4
2725 Female, age 75, unknown 98.8
2823 Male, age 76, right hemisphere 91.0
2584 Male, age 75, left hemisphere 84.9
2785 Male, age 18, unknown 75.0
Substantia nigra
nTPM: 101.3
2699 Male, age 18, unknown 138.6
1916 Female, age 42, unknown 121.1
2241 Male, age 72, unknown 106.2
1889 Female, age 72, unknown 105.1
1851 Male, age 51, unknown 99.7
2409 Female, age 72, unknown 99.7
2583 Male, age 75, right hemisphere 96.4
2590 Female, age 75, unknown 92.9
2665 Male, age 74, both hemispheres 79.6
1941 Male, age 53, unknown 73.8
Superior colliculus
nTPM: 100.9
2664 Male, age 75, both hemispheres 143.8
1839 Male, age 51, unknown 112.5
1796 Male, age 53, unknown 104.2
2668 Female, age 75, unknown 103.9
2261 Male, age 18, unknown 103.0
2087 Female, age 72, unknown 102.2
1995 Male, age 72, unknown 101.7
2587 Male, age 74, left hemisphere 87.0
1913 Female, age 42, unknown 76.2
1895 Male, age 76, right hemisphere 74.4
Ventral tegmental area
nTPM: 87.4
2410 Female, age 72, unknown 105.8
1915 Female, age 42, unknown 92.2
2021 Male, age 53, unknown 90.7
1942 Male, age 51, unknown 84.6
2218 Male, age 76, both hemispheres 83.2
2223 Female, age 72, unknown 67.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.5
Samples: 139

Max nTPM: 497.4
Min nTPM: 5.4
Std nTPM: 78.2
Median nTPM: 63.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 497.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 403.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 372.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 292.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 284.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 256.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 248.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 237.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 225.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 222.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 202.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.1
FF:10158-103A5 76 years, female 96.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.6
Pig sample Sample description nTPM
Midbrain
nTPM: 49.0
Samples: 4

Max nTPM: 55.5
Min nTPM: 45.3
Sample A Female 47.0
Sample B Female 55.5
Sample C Male 48.3
Sample D Male 45.3
Periaqueductal gray
nTPM: 50.3
Samples: 3

Max nTPM: 60.0
Min nTPM: 44.8
Sample B Female 60.0
Sample C Male 44.8
Sample D Male 46.2
Substantia nigra
nTPM: 59.1
Samples: 4

Max nTPM: 73.3
Min nTPM: 49.2
Sample A Female 51.7
Sample B Female 62.0
Sample C Male 49.2
Sample D Male 73.3
Superior colliculi
nTPM: 60.6
Samples: 4

Max nTPM: 70.6
Min nTPM: 51.5
Sample A Female 70.6
Sample B Female 65.1
Sample C Male 51.5
Sample D Male 55.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.1
Samples: 4

Max nTPM: 73.5
Min nTPM: 58.9
Sample A Male 68.0
Sample B Male 58.9
Sample C Female 73.5
Sample D Female 72.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
633291 Antisense, RP_040907_02_E08, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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