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SRSF6
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:24.1 nTPM
FANTOM5:74.0 Scaled Tags Per Million
Mouse:23.7 nTPM
Allen mouse:4.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029005Antibody CAB034889
Glial cells HighHigh
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.6
2288 Male, age 75, left hemisphere 35.4
2289 Male, age 61, right hemisphere 34.2
2846 Female, age 79, unknown 32.9
2481 Female, age 94, left hemisphere 32.7
1854 Male, age 80, left hemisphere 32.5
2290 Female, age 72, unknown 32.3
1857 Female, age 85, left hemisphere 30.6
1781 Male, age 74, unknown 30.1
Claustrum
nTPM: 32.9
2392 Female, age 94, both hemispheres 34.5
2196 Female, age 79, unknown 34.4
2491 Male, age 75, both hemispheres 34.3
2292 Female, age 85, both hemispheres 34.1
2284 Female, age 91, both hemispheres 33.7
1956 Male, age 74, unknown 33.5
2198 Male, age 80, both hemispheres 32.6
2568 Male, age 61, both hemispheres 32.0
2645 Female, age 72, unknown 27.3
Globus pallidus, externus
nTPM: 34.3
2772 Female, age 79, unknown 37.3
2395 Male, age 75, both hemispheres 35.5
1996 Male, age 80, right hemisphere 33.8
2567 Female, age 72, unknown 32.5
2646 Male, age 61, right hemisphere 32.3
Globus pallidus, internus
nTPM: 37.5
2778 Female, age 91, both hemispheres 43.2
2111 Female, age 85, right hemisphere 41.7
2287 Male, age 75, right hemisphere 40.9
1818 Male, age 74, unknown 35.4
2566 Female, age 72, unknown 35.0
2037 Male, age 80, right hemisphere 33.4
2483 Female, age 94, right hemisphere 33.0
Nucleus accumbens
nTPM: 34.4
2391 Female, age 94, left hemisphere 38.4
2286 Male, age 75, left hemisphere 36.0
2824 Male, age 61, right hemisphere 35.4
2732 Male, age 80, right hemisphere 34.1
2698 Female, age 72, unknown 33.9
1806 Female, age 85, left hemisphere 33.1
1783 Male, age 74, unknown 32.3
1856 Female, age 91, right hemisphere 32.0
Nucleus basalis of Meynert
nTPM: 31.9
2821 Male, age 75, both hemispheres 33.8
2484 Female, age 94, left hemisphere 33.3
2393 Male, age 80, right hemisphere 31.8
2569 Male, age 61, both hemispheres 28.5
Nucleus of the diagonal band
nTPM: 32.6
1979 Male, age 74, unknown 37.2
2195 Female, age 85, both hemispheres 33.3
2775 Male, age 80, right hemisphere 31.7
2029 Male, age 61, right hemisphere 31.5
1812 Female, age 91, both hemispheres 29.2
Olfactory tubercle
nTPM: 31.0
2487 Female, age 94, left hemisphere 32.6
1998 Female, age 91, both hemispheres 31.0
2856 Male, age 75, right hemisphere 30.5
1846 Male, age 80, right hemisphere 30.2
Putamen
nTPM: 32.1
2466 Female, age 79, unknown 34.9
2482 Female, age 94, left hemisphere 33.9
1829 Male, age 74, unknown 33.3
1937 Female, age 91, right hemisphere 32.4
1838 Male, age 80, right hemisphere 30.9
2489 Female, age 72, unknown 30.3
2647 Male, age 75, left hemisphere 28.8
Septal nuclei
nTPM: 32.4
2059 Female, age 85, both hemispheres 34.1
2394 Male, age 61, left hemisphere 33.7
2199 Male, age 80, right hemisphere 33.5
1960 Male, age 74, unknown 33.3
2031 Female, age 72, unknown 31.4
2009 Female, age 91, both hemispheres 30.6
2629 Female, age 94, right hemisphere 30.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 39.5
Min nTPM: 10.5
Std nTPM: 5.0
Median nTPM: 23.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 37.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 37.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 36.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 35.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 34.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 34.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 34.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 33.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 32.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.9
Samples: 246

Max nTPM: 40.3
Min nTPM: 9.8
Std nTPM: 5.0
Median nTPM: 23.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 40.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 38.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 37.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 37.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 36.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 34.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 34.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 33.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 33.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 32.2
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 31.8
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Brain - Putamen (basal ganglia)
Average nTPM: 24.1
Samples: 205

Max nTPM: 39.6
Min nTPM: 12.3
Std nTPM: 4.8
Median nTPM: 24.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 39.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 38.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 37.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 35.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 35.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 34.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 32.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 32.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 32.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 31.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 31.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.9
FF:10164-103B2 76 years, female 66.9
Globus pallidus
Scaled Tags Per Million: 74.0
FF:10161-103A8 76 years, female 111.8
FF:10175-103C4 60 years, female 36.3
Nucleus accumbens
Scaled Tags Per Million: 59.7
FF:10037-101F1 23-56 years, mixed 59.7
Putamen
Scaled Tags Per Million: 51.9
FF:10176-103C5 60 years, female 51.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.7
Samples: 4

Max nTPM: 18.3
Min nTPM: 17.2
Sample A Male 17.4
Sample B Male 17.2
Sample C Female 18.3
Sample D Female 17.9
Septum
nTPM: 23.7
Samples: 4

Max nTPM: 24.9
Min nTPM: 20.8
Sample A Male 24.9
Sample B Male 24.9
Sample C Female 20.8
Sample D Female 24.1
Ventral forebrain
nTPM: 18.6
Samples: 4

Max nTPM: 21.2
Min nTPM: 16.4
Sample A Male 21.2
Sample B Male 18.7
Sample C Female 16.4
Sample D Female 18.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.9
413829 Antisense, RP_040809_01_H07, Mouse strain C57BL/6J (56 days, male) 4.9
Pallidum
Expression energy: 3.2
413829 Antisense, RP_040809_01_H07, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.