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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:25.8 nTPM
FANTOM5:211.6 Scaled Tags Per Million
Pig:48.7 nTPM
Mouse:37.4 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049892Antibody CAB020839
Glial cells MediumLow
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.7
2288 Male, age 75, left hemisphere 39.5
2290 Female, age 72, unknown 37.2
2846 Female, age 79, unknown 35.2
2481 Female, age 94, left hemisphere 34.6
2289 Male, age 61, right hemisphere 33.8
1781 Male, age 74, unknown 33.5
1857 Female, age 85, left hemisphere 32.6
1854 Male, age 80, left hemisphere 31.5
Claustrum
nTPM: 34.5
2292 Female, age 85, both hemispheres 38.5
1956 Male, age 74, unknown 37.2
2196 Female, age 79, unknown 35.8
2568 Male, age 61, both hemispheres 34.6
2198 Male, age 80, both hemispheres 34.2
2491 Male, age 75, both hemispheres 34.0
2284 Female, age 91, both hemispheres 33.7
2645 Female, age 72, unknown 32.3
2392 Female, age 94, both hemispheres 29.8
Globus pallidus, externus
nTPM: 34.6
1996 Male, age 80, right hemisphere 35.4
2646 Male, age 61, right hemisphere 35.2
2395 Male, age 75, both hemispheres 35.0
2772 Female, age 79, unknown 35.0
2567 Female, age 72, unknown 32.3
Globus pallidus, internus
nTPM: 36.5
2287 Male, age 75, right hemisphere 44.0
2778 Female, age 91, both hemispheres 37.3
1818 Male, age 74, unknown 36.6
2111 Female, age 85, right hemisphere 35.8
2566 Female, age 72, unknown 34.7
2483 Female, age 94, right hemisphere 33.9
2037 Male, age 80, right hemisphere 33.4
Nucleus accumbens
nTPM: 31.2
2698 Female, age 72, unknown 35.6
2286 Male, age 75, left hemisphere 34.4
2391 Female, age 94, left hemisphere 32.9
1806 Female, age 85, left hemisphere 31.9
1783 Male, age 74, unknown 30.9
2732 Male, age 80, right hemisphere 28.7
2824 Male, age 61, right hemisphere 28.0
1856 Female, age 91, right hemisphere 27.4
Nucleus basalis of Meynert
nTPM: 32.6
2821 Male, age 75, both hemispheres 34.6
2569 Male, age 61, both hemispheres 34.0
2393 Male, age 80, right hemisphere 31.6
2484 Female, age 94, left hemisphere 30.1
Nucleus of the diagonal band
nTPM: 33.1
1812 Female, age 91, both hemispheres 34.8
2195 Female, age 85, both hemispheres 34.8
2775 Male, age 80, right hemisphere 33.5
2029 Male, age 61, right hemisphere 32.8
1979 Male, age 74, unknown 29.5
Olfactory tubercle
nTPM: 33.0
1846 Male, age 80, right hemisphere 36.5
2856 Male, age 75, right hemisphere 32.9
2487 Female, age 94, left hemisphere 31.5
1998 Female, age 91, both hemispheres 31.3
Putamen
nTPM: 33.2
2647 Male, age 75, left hemisphere 37.2
2482 Female, age 94, left hemisphere 34.9
1829 Male, age 74, unknown 34.2
2489 Female, age 72, unknown 34.0
2466 Female, age 79, unknown 33.0
1838 Male, age 80, right hemisphere 29.8
1937 Female, age 91, right hemisphere 29.6
Septal nuclei
nTPM: 30.9
2629 Female, age 94, right hemisphere 37.2
1960 Male, age 74, unknown 34.3
2031 Female, age 72, unknown 33.4
2009 Female, age 91, both hemispheres 29.7
2059 Female, age 85, both hemispheres 29.4
2199 Male, age 80, right hemisphere 26.6
2394 Male, age 61, left hemisphere 25.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.8
Samples: 246

Max nTPM: 41.8
Min nTPM: 9.5
Std nTPM: 6.0
Median nTPM: 25.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 41.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 41.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 39.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 39.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 38.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 37.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 37.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 36.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 35.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 35.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.5
Samples: 246

Max nTPM: 44.4
Min nTPM: 1.7
Std nTPM: 7.7
Median nTPM: 24.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 44.4
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 41.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 39.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 39.3
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 38.0
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 37.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 37.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 37.0
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 36.9
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 35.9
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 35.9
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Brain - Putamen (basal ganglia)
Average nTPM: 24.2
Samples: 205

Max nTPM: 42.6
Min nTPM: 11.8
Std nTPM: 5.9
Median nTPM: 23.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 42.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 41.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 39.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 38.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 36.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 35.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 34.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 34.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 33.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 33.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 33.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 132.4
FF:10164-103B2 76 years, female 132.4
Globus pallidus
Scaled Tags Per Million: 211.6
FF:10175-103C4 60 years, female 238.3
FF:10161-103A8 76 years, female 184.8
Nucleus accumbens
Scaled Tags Per Million: 162.0
FF:10037-101F1 23-56 years, mixed 162.0
Putamen
Scaled Tags Per Million: 145.3
FF:10176-103C5 60 years, female 145.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.7
Pig sample Sample description nTPM
Caudate
nTPM: 37.4
Samples: 4

Max nTPM: 42.8
Min nTPM: 32.8
Sample A Female 32.8
Sample B Female 38.3
Sample C Male 42.8
Sample D Male 35.8
Putamen
nTPM: 48.7
Samples: 4

Max nTPM: 60.6
Min nTPM: 42.0
Sample A Female 43.9
Sample B Female 42.0
Sample C Male 60.6
Sample D Male 48.1
Septum
nTPM: 36.9
Samples: 4

Max nTPM: 39.8
Min nTPM: 34.8
Sample A Female 39.8
Sample B Female 37.0
Sample C Male 34.8
Sample D Male 35.9
Ventral pallidum
nTPM: 39.3
Samples: 4

Max nTPM: 40.8
Min nTPM: 35.2
Sample A Female 35.2
Sample B Female 40.6
Sample C Male 40.6
Sample D Male 40.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.5
Samples: 4

Max nTPM: 39.0
Min nTPM: 35.9
Sample A Male 38.0
Sample B Male 35.9
Sample C Female 36.9
Sample D Female 39.0
Septum
nTPM: 33.8
Samples: 4

Max nTPM: 35.1
Min nTPM: 32.6
Sample A Male 33.1
Sample B Male 32.6
Sample C Female 34.5
Sample D Female 35.1
Ventral forebrain
nTPM: 35.1
Samples: 4

Max nTPM: 36.7
Min nTPM: 33.4
Sample A Male 33.4
Sample B Male 36.7
Sample C Female 34.1
Sample D Female 36.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68301258 Antisense, RP_041129_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
68301258 Antisense, RP_041129_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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