ABOUTMENU
HELP
NEWS
USP22
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.1 nTPM
HPA:78.1 nTPM
GTEx:59.4 nTPM
FANTOM5:133.5 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:101.6 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.3
2586 Male, age 75, left hemisphere 105.0
2666 Male, age 74, left hemisphere 83.9
1827 Male, age 72, unknown 79.6
1870 Female, age 42, unknown 73.3
2411 Female, age 72, unknown 71.4
2828 Female, age 72, unknown 68.3
1833 Male, age 53, unknown 65.7
2219 Male, age 76, both hemispheres 65.5
1830 Male, age 51, unknown 61.9
2019 Male, age 18, unknown 58.8
Dorsal raphe nucleus
nTPM: 71.6
2298 Female, age 72, unknown 80.9
2047 Male, age 72, unknown 77.7
1828 Male, age 53, unknown 68.5
2016 Female, age 72, unknown 66.3
2750 Male, age 76, both hemispheres 64.9
Inferior colliculus
nTPM: 78.1
2097 Female, age 72, unknown 82.3
2849 Male, age 72, unknown 80.5
1848 Female, age 42, unknown 74.9
1890 Male, age 53, unknown 74.8
Median raphe nucleus
nTPM: 68.9
2220 Male, age 76, midline 68.9
Pedunculopontine tegmental nucleus
nTPM: 64.0
1921 Female, age 85, both hemispheres 77.2
2334 Male, age 80, both hemispheres 66.7
2338 Male, age 61, both hemispheres 48.0
Periaquaductal grey, anterior
nTPM: 75.9
1947 Male, age 18, unknown 79.0
2502 Female, age 75, unknown 74.6
1795 Male, age 51, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 72.2
1840 Male, age 53, unknown 94.4
1831 Male, age 72, unknown 69.9
2464 Female, age 72, unknown 68.4
2850 Male, age 76, both hemispheres 56.2
Periaquaductal grey, lateral
nTPM: 61.8
2053 Male, age 18, unknown 69.9
2140 Male, age 76, both hemispheres 61.6
2272 Male, age 74, both hemispheres 54.1
Pretectal area
nTPM: 70.3
2825 Male, age 18, unknown 82.0
1816 Male, age 51, unknown 81.0
2224 Female, age 72, unknown 78.6
1944 Female, age 72, unknown 72.1
1817 Female, age 42, unknown 71.2
2407 Male, age 75, both hemispheres 71.0
2007 Male, age 72, unknown 70.8
2667 Female, age 75, unknown 68.2
1815 Male, age 53, unknown 64.8
2316 Male, age 76, right hemisphere 60.0
2273 Male, age 74, both hemispheres 53.3
Red nucleus
nTPM: 61.4
2584 Male, age 75, left hemisphere 81.9
2588 Male, age 74, left hemisphere 67.7
1821 Female, age 72, unknown 65.0
2725 Female, age 75, unknown 63.7
1954 Female, age 42, unknown 61.5
2503 Female, age 72, unknown 61.0
2227 Male, age 72, unknown 60.6
2769 Male, age 72, unknown 59.9
1904 Male, age 53, unknown 57.1
2785 Male, age 18, unknown 55.8
1865 Male, age 51, unknown 52.8
2823 Male, age 76, right hemisphere 49.9
Substantia nigra
nTPM: 75.3
2241 Male, age 72, unknown 84.2
1916 Female, age 42, unknown 84.0
2583 Male, age 75, right hemisphere 80.4
1851 Male, age 51, unknown 79.2
2665 Male, age 74, both hemispheres 76.8
1889 Female, age 72, unknown 73.2
2409 Female, age 72, unknown 70.9
1941 Male, age 53, unknown 68.8
2590 Female, age 75, unknown 67.7
2699 Male, age 18, unknown 67.5
Superior colliculus
nTPM: 70.9
2664 Male, age 75, both hemispheres 95.6
2668 Female, age 75, unknown 77.5
1796 Male, age 53, unknown 76.5
2261 Male, age 18, unknown 75.2
1839 Male, age 51, unknown 75.0
1895 Male, age 76, right hemisphere 70.3
2087 Female, age 72, unknown 68.7
2587 Male, age 74, left hemisphere 62.7
1913 Female, age 42, unknown 56.5
1995 Male, age 72, unknown 51.6
Ventral tegmental area
nTPM: 73.8
1915 Female, age 42, unknown 78.6
1942 Male, age 51, unknown 77.3
2021 Male, age 53, unknown 75.9
2410 Female, age 72, unknown 73.6
2218 Male, age 76, both hemispheres 70.0
2223 Female, age 72, unknown 67.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.4
Samples: 139

Max nTPM: 92.1
Min nTPM: 36.5
Std nTPM: 10.4
Median nTPM: 58.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 92.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 88.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 87.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 84.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 76.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 75.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 74.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 74.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 73.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 73.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 133.5
FF:10158-103A5 76 years, female 133.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.2
Pig sample Sample description nTPM
Midbrain
nTPM: 46.4
Samples: 4

Max nTPM: 67.8
Min nTPM: 33.3
Sample A Female 33.9
Sample B Female 33.3
Sample C Male 67.8
Sample D Male 50.4
Periaqueductal gray
nTPM: 34.5
Samples: 3

Max nTPM: 42.3
Min nTPM: 28.7
Sample B Female 32.6
Sample C Male 42.3
Sample D Male 28.7
Substantia nigra
nTPM: 41.9
Samples: 4

Max nTPM: 59.6
Min nTPM: 23.2
Sample A Female 59.6
Sample B Female 33.0
Sample C Male 51.8
Sample D Male 23.2
Superior colliculi
nTPM: 47.2
Samples: 4

Max nTPM: 55.7
Min nTPM: 39.8
Sample A Female 51.3
Sample B Female 39.8
Sample C Male 55.7
Sample D Male 42.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.6
Samples: 4

Max nTPM: 103.6
Min nTPM: 99.1
Sample A Male 101.7
Sample B Male 99.1
Sample C Female 103.6
Sample D Female 102.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
70194624 Antisense, RP_050517_01_G05, Mouse strain C57BL/6J (56 days, male) 10.3
74957911 Antisense, RP_060315_05_A08, Mouse strain C57BL/6J (56 days, male) 9.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.